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GitHub / eddykay310 / demeter
provides pseudogene prediction tools (prokka, DFAST and pseudofinder) and post prediction pan-genome analysis of pseudogenes
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eddykay310%2Fdemeter
Stars: 0
Forks: 0
Open Issues: 0
License: bsd-3-clause
Language: Shell
Repo Size: 149 KB
Dependencies:
609
Created: over 2 years ago
Updated: almost 2 years ago
Last pushed: almost 2 years ago
Last synced: about 1 year ago
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Dependencies
- biopython =1.78=py39h3811e60_2
- blast =2.11.0=pl526he19e7b1_0
- boost-cpp =1.74.0=hc6e9bd1_2
- bzip2 =1.0.8=h7f98852_4
- c-ares =1.17.1=h7f98852_1
- ca-certificates =2020.12.5=ha878542_0
- certifi =2020.12.5=py39hf3d152e_1
- curl =7.76.1=h979ede3_1
- diamond =2.0.9=hdcc8f71_0
- entrez-direct =13.9=pl5262he881be0_2
- expat =2.3.0=h9c3ff4c_0
- freetype =2.10.4=h0708190_1
- hmmer =3.2.1=he1b5a44_2
- icu =68.1=h58526e2_0
- jpeg =9d=h36c2ea0_0
- krb5 =1.17.2=h926e7f8_0
- lcms2 =2.12=hddcbb42_0
- ld_impl_linux-64 =2.35.1=hea4e1c9_2
- libblas =3.9.0=9_openblas
- libcblas =3.9.0=9_openblas
- libcurl =7.76.1=hc4aaa36_1
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- libev =4.33=h516909a_1
- libffi =3.3=h58526e2_2
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- brotli =1.0.9=h7f98852_6
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- bwa =0.7.17=h5bf99c6_8
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- cd-hit =4.8.1=h2e03b76_5
- certifi =2022.6.15=py37h89c1867_0
- checkm-genome =1.1.3=py_1
- circos =0.69.8=hdfd78af_1
- clustalw =2.1=h7d875b9_6
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- perl-module-runtime =0.016=pl526_1
- perl-module-runtime-conflicts =0.003=pl526_0
- perl-moo =2.003004=pl526_0
- perl-moose =2.2011=pl526hf484d3e_1
- perl-mozilla-ca =20180117=pl526_1
- perl-mro-compat =0.13=pl526_0
- perl-net-http =6.19=pl526_0
- perl-net-ssleay =1.88=pl526h90d6eec_0
- perl-ntlm =1.09=pl526_4
- perl-number-format =1.75=pl526_3
- perl-ole-storage_lite =0.19=pl526_3
- perl-package-deprecationmanager =0.17=pl526_0
- perl-package-stash =0.38=pl526hf484d3e_1
- perl-package-stash-xs =0.28=pl526hf484d3e_1
- perl-params-util =1.07=pl526h6bb024c_4
- perl-params-validate =1.29=pl526h14c3975_1
- perl-parent =0.236=pl526_1
- perl-parse-recdescent =1.967015=pl526_0
- perl-pathtools =3.75=pl526h14c3975_1
- perl-pdf-api2 =2.035=pl526_0
- perl-pod-escapes =1.07=pl526_1
- perl-pod-usage =1.69=pl526_1
- perl-postscript =0.06=pl526_2
- perl-readonly =2.05=pl526_0
- perl-regexp-common =2017060201=pl526_0
- perl-role-tiny =2.000008=pl526_0
- perl-scalar-list-utils =1.52=pl526h516909a_0
- perl-set-intspan =1.19=pl526_1
- perl-set-scalar =1.29=pl526_2
- perl-soap-lite =1.19=pl526_1
- perl-socket =2.027=pl526_1
- perl-sort-naturally =1.03=pl526_2
- perl-spreadsheet-parseexcel =0.65=pl526_2
- perl-spreadsheet-writeexcel =2.40=pl526_2
- perl-statistics-basic =1.6611=pl526_2
- perl-statistics-descriptive =3.0702=pl526_0
- perl-storable =3.15=pl526h14c3975_0
- perl-sub-exporter =0.987=pl526_2
- perl-sub-exporter-progressive =0.001013=pl526_0
- perl-sub-identify =0.14=pl526h14c3975_0
- perl-sub-install =0.928=pl526_2
- perl-sub-name =0.21=pl526_1
- perl-sub-quote =2.006003=pl526_1
- perl-sub-uplevel =0.2800=pl526h14c3975_2
- perl-svg =2.84=pl526_0
- perl-svg-graph =0.02=pl526_3
- perl-task-weaken =1.06=pl526_0
- perl-template-toolkit =2.26=pl526_1
- perl-test =1.26=pl526_1
- perl-test-deep =1.128=pl526_1
- perl-test-differences =0.67=pl526_0
- perl-test-exception =0.43=pl526_2
- perl-test-harness =3.42=pl526_0
- perl-test-leaktrace =0.16=pl526h14c3975_2
- perl-test-most =0.35=pl526_0
- perl-test-requiresinternet =0.05=pl526_0
- perl-test-warn =0.36=pl526_1
- perl-text-diff =1.45=pl526_0
- perl-text-format =0.59=pl526_2
- perl-threaded =5.26.0=0
- perl-tie-ixhash =1.23=pl526_2
- perl-time-hires =1.9760=pl526h14c3975_1
- perl-time-local =1.28=pl526_1
- perl-time-piece =1.27=pl526_1
- perl-timedate =2.30=pl526_1
- perl-tree-dag_node =1.31=pl526_0
- perl-try-tiny =0.30=pl526_1
- perl-type-tiny =1.004004=pl526_0
- perl-types-serialiser =1.0=pl526_2
- perl-unicode-map =0.112=pl526h6bb024c_3
- perl-uri =1.76=pl526_0
- perl-www-robotrules =6.02=pl526_3
- perl-xml-dom =1.46=pl526_0
- perl-xml-dom-xpath =0.14=pl526_1
- perl-xml-filter-buffertext =1.01=pl526_2
- perl-xml-libxml =2.0132=pl526h7ec2d77_1
- perl-xml-libxslt =1.94=pl526_1
- perl-xml-namespacesupport =1.12=pl526_0
- perl-xml-parser =2.44=4
- perl-xml-regexp =0.04=pl526_2
- perl-xml-sax =1.02=pl526_0
- perl-xml-sax-base =1.09=pl526_0
- perl-xml-sax-expat =0.51=pl526_3
- perl-xml-sax-writer =0.57=pl526_0
- perl-xml-simple =2.25=pl526_1
- perl-xml-twig =3.52=pl526_2
- perl-xml-writer =0.625=pl526_2
- perl-xml-xpath =1.44=pl526_0
- perl-xml-xpathengine =0.14=pl526_2
- perl-xsloader =0.24=pl526_0
- perl-yaml =1.29=pl526_0
- phipack =1.1=hec16e2b_2
- pigz =2.6=h27826a3_0
- pillow =6.2.1=py37h6b7be26_0
- pilon =1.24=hdfd78af_0
- pip =21.3.1=pyhd8ed1ab_0
- pixman =0.38.0=h516909a_1003
- pplacer =1.1.alpha19=h9ee0642_2
- prodigal =2.6.3=h779adbc_3
- prokka =1.14.6=pl5262hdfd78af_1
- pthread-stubs =0.4=h36c2ea0_1001
- pyparsing =3.0.6=pyhd8ed1ab_0
- pysam =0.17.0=py37h45aed0b_0
- python =3.7.12=hb7a2778_100_cpython
- python-dateutil =2.8.2=pyhd8ed1ab_0
- python_abi =3.7=2_cp37m
- pytz =2021.3=pyhd8ed1ab_0
- quast =5.0.2=py37pl5262hfecc14a_5
- ragtag =2.1.0=pyhb7b1952_0
- raxml =8.2.12=hec16e2b_4
- readline =8.1=h46c0cb4_0
- samclip =0.4.0=hdfd78af_1
- samtools =1.14=hb421002_0
- scipy =1.7.3=py37hf2a6cf1_0
- seqtk =1.3=h5bf99c6_3
- setuptools =60.1.0=py37h89c1867_0
- shovill =1.1.0=hdfd78af_1
- simplejson =3.17.6=py37h5e8e339_0
- six =1.16.0=pyh6c4a22f_0
- skesa =2.4.0=he1c1bb9_0
- sortedcontainers =2.4.0=pyhd8ed1ab_0
- spades =3.15.3=h95f258a_1
- sqlite =3.37.0=h9cd32fc_0
- sysroot_linux-64 =2.17=h4a8ded7_13
- t_coffee =11.0.8=py37hea885bf_8
- tbb =2020.2=h4bd325d_4
- tbl2asn-forever =25.7.2f=h779adbc_1
- tidyp =1.04=h779adbc_3
- tk =8.6.11=h27826a3_1
- tornado =6.1=py37h5e8e339_2
- trimmomatic =0.39=hdfd78af_2
- unicodedata2 =14.0.0=py37h5e8e339_0
- unzip =6.0=h7f98852_2
- velvet =1.2.10=h5bf99c6_4
- wget =1.20.3=ha56f1ee_1
- wheel =0.37.1=pyhd8ed1ab_0
- xorg-kbproto =1.0.7=h7f98852_1002
- xorg-libice =1.0.10=h7f98852_0
- xorg-libsm =1.2.3=hd9c2040_1000
- xorg-libx11 =1.7.2=h7f98852_0
- xorg-libxau =1.0.9=h7f98852_0
- xorg-libxdmcp =1.1.3=h7f98852_0
- xorg-libxext =1.3.4=h7f98852_1
- xorg-libxpm =3.5.13=h7f98852_0
- xorg-libxrender =0.9.10=h7f98852_1003
- xorg-libxt =1.2.1=h7f98852_2
- xorg-renderproto =0.11.1=h7f98852_1002
- xorg-xextproto =7.3.0=h7f98852_1002
- xorg-xproto =7.0.31=h7f98852_1007
- xz =5.2.5=h516909a_1
- zlib =1.2.11=h36c2ea0_1013
- zstd =1.4.9=ha95c52a_0
- altair =4.2.0=pyhd8ed1ab_1
- attrs =21.4.0=pyhd8ed1ab_0
- brotlipy =0.7.0=py310h5764c6d_1004
- bzip2 =1.0.8=h7f98852_4
- ca-certificates =2022.5.18.1=ha878542_0
- certifi =2022.6.15=py310hff52083_0
- cffi =1.15.0=py310h0fdd8cc_0
- charset-normalizer =2.0.12=pyhd8ed1ab_0
- cogclassifier =1.0.4=pyhdfd78af_0
- cryptography =37.0.2=py310h597c629_0
- entrypoints =0.4=pyhd8ed1ab_0
- idna =3.3=pyhd8ed1ab_0
- importlib-metadata =4.11.4=py310hff52083_0
- importlib_resources =5.7.1=pyhd8ed1ab_1
- jinja2 =3.1.2=pyhd8ed1ab_1
- jsonschema =4.6.0=pyhd8ed1ab_0
- ld_impl_linux-64 =2.36.1=hea4e1c9_2
- libblas =3.9.0=15_linux64_openblas
- libcblas =3.9.0=15_linux64_openblas
- libffi =3.4.2=h7f98852_5
- libgcc-ng =12.1.0=h8d9b700_16
- libgfortran-ng =12.1.0=h69a702a_16
- libgfortran5 =12.1.0=hdcd56e2_16
- libgomp =12.1.0=h8d9b700_16
- liblapack =3.9.0=15_linux64_openblas
- libnsl =2.0.0=h7f98852_0
- libopenblas =0.3.20=pthreads_h78a6416_0
- libstdcxx-ng =12.1.0=ha89aaad_16
- libuuid =2.32.1=h7f98852_1000
- libzlib =1.2.12=h166bdaf_1
- markupsafe =2.1.1=py310h5764c6d_1
- ncurses =6.3=h27087fc_1
- numpy =1.22.4=py310h4ef5377_0
- openssl =1.1.1o=h166bdaf_0
- pandas =1.4.2=py310h769672d_2
- pip =22.1.2=pyhd8ed1ab_0
- pycparser =2.21=pyhd8ed1ab_0
- pyopenssl =22.0.0=pyhd8ed1ab_0
- pyrsistent =0.18.1=py310h5764c6d_1
- pysocks =1.7.1=py310hff52083_5
- python =3.10.5=h582c2e5_0_cpython
- python-dateutil =2.8.2=pyhd8ed1ab_0
- python_abi =3.10=2_cp310
- pytz =2022.1=pyhd8ed1ab_0
- readline =8.1.2=h0f457ee_0
- requests =2.28.0=pyhd8ed1ab_0
- setuptools =62.3.4=py310hff52083_0
- six =1.16.0=pyh6c4a22f_0
- sqlite =3.38.5=h4ff8645_0
- tk =8.6.12=h27826a3_0
- toolz =0.11.2=pyhd8ed1ab_0
- tzdata =2022a=h191b570_0
- urllib3 =1.26.9=pyhd8ed1ab_0
- wheel =0.37.1=pyhd8ed1ab_0
- xz =5.2.5=h516909a_1
- zipp =3.8.0=pyhd8ed1ab_0
- zlib =1.2.12=h166bdaf_1