Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: pypi: cd-hit

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/cd-hit

Dependent Repos 5

nickdeveaux/Defaults
Developer defaults
  • * apt_requirements.txt

Size: 523 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago

amromics/panta
Pan-genome Analysis
  • ==4.8.1 requirements.txt

Size: 76.6 MB - Last synced: 17 days ago - Pushed: 17 days ago

broadinstitute/viral-ngs
Viral genomics analysis pipelines
  • =4.6.8 requirements-conda.txt

Size: 64.5 MB - Last synced: 7 months ago - Pushed: over 3 years ago

wzuhou/Genome_assembly_annotation
Scripts and pipeine for Genome_assembly_annotation
  • =4.8.1=h5b5514e_6 Anno_pipeline/requirements.old.txt
  • =4.8.1=h5b5514e_6 Anno_pipeline/requirements.txt

Size: 108 KB - Last synced: 26 days ago - Pushed: 26 days ago

broadinstitute/viral-core
viral-ngs: read QC, barcode metrics, spike-in metrics, Illumina metrics and demux
  • =4.6.8 requirements-conda.txt

Size: 60.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

joybio/multiPrime
multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))
  • =4.8.1 requirement.txt
  • =4.8.1 requirement2.txt

Size: 96.1 MB - Last synced: about 1 month ago - Pushed: 2 months ago

EthanHolleman/CoRNonCOB
Compare really non-colossal oligonucleotides in bacteria
  • * requirements.txt

Size: 12.9 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

broadinstitute/cms2
CMS 2.0
  • =4.6.8 requirements-conda.txt

Size: 107 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

eddykay310/demeter
provides pseudogene prediction tools (prokka, DFAST and pseudofinder) and post prediction pan-genome analysis of pseudogenes
  • =4.8.1=h2e03b76_5 requirements/base_requirements.txt

Size: 149 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

sudarshangc/viral-ngs Fork of broadinstitute/viral-ngs
Viral genomics analysis pipelines
  • =4.6.8 requirements-conda.txt

Size: 60.1 MB - Last synced: 10 months ago - Pushed: over 4 years ago

novapyth/viral-ngs Fork of broadinstitute/viral-ngs
Viral genomics analysis pipelines
  • =4.6.8 requirements-conda.txt

Size: 64.5 MB - Last synced: 10 months ago - Pushed: about 4 years ago

xxmalcala/TIdeS
ML approach to discerning "best" Open Reading Frames (ORFs) from "noisy" transcriptomic data. Intended for identification of lineage-specific genes and decontamination from scRNA-seq assemblies.
  • >=4.8 util/tides_ml-biconda-requirements.txt

Size: 1.3 MB - Last synced: 26 days ago - Pushed: 4 months ago

AbeelLab/SHIP
  • =4.8.1=h5b5514e_7 requirements.txt

Size: 127 MB - Last synced: about 2 months ago - Pushed: 5 months ago

vanhoan310/Pasa_Panta
  • ==4.8.1 requirements.txt

Size: 11.2 MB - Last synced: 14 days ago - Pushed: 14 days ago