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GitHub / nicwulab / SARS-CoV-2_in_vitro_adaptation

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nicwulab%2FSARS-CoV-2_in_vitro_adaptation

Stars: 1
Forks: 2
Open Issues: 0

License: apache-2.0
Language: Python
Repo Size: 1.64 MB
Dependencies: 207

Created: over 3 years ago
Updated: 9 months ago
Last pushed: almost 3 years ago
Last synced: 9 months ago

Files

Readme

Dependencies

requirements.txt pypi

aioeasywebdav =2.4.0=py36h9f0ad1d_1001
aiohttp =2.3.9=py36_0
amply =0.1.4=py_0
appdirs =1.4.4=pyh9f0ad1d_0
async-timeout =3.0.1=py36_0
atk-1.0 =2.36.0=he69c4ee_4
attrs =20.3.0=pyhd3eb1b0_0
backports =1.0=py36_1
backports.functools_lru_cache =1.6.1=pyhd3eb1b0_0
bamutil =1.0.14=hd174df1_5
bcrypt =3.2.0=py36h20b66c6_1
boto3 =1.16.56=pyhd8ed1ab_0
botocore =1.19.56=pyhd8ed1ab_0
bowtie2 =2.4.2=py36h0c56d2d_1
brotlipy =0.7.0=py36h9ed2024_1003
bzip2 =1.0.8=hc929b4f_4
c-ares =1.17.1=hc929b4f_0
ca-certificates =2020.12.8=hecd8cb5_0
cachetools =4.2.0=pyhd3eb1b0_0
cairo =1.16.0=h4ec454a_1007
certifi =2020.12.5=py36h79c6626_1
cffi =1.14.4=py36hfe0777f_1
chardet =4.0.0=py36hecd8cb5_1003
coincbc =2.10.5=h9fab268_1
configargparse =1.2.3=pyh9f0ad1d_0
cutadapt =3.2=py36he651532_0
cycler =0.10.0=py36_0
dataclasses =0.7=py36_0
datrie =0.8.2=py36h9de38fb_1
decorator =4.4.2=py_0
dnaio =0.5.0=py36he651532_0
docutils =0.16=py36h79c6626_3
dropbox =10.10.0=py36hecd8cb5_0
fftw =3.3.9=h9ed2024_1
filechunkio =1.8=py36_1
font-ttf-dejavu-sans-mono =2.37=hab24e00_0
font-ttf-inconsolata =2.001=hcb22688_0
font-ttf-source-code-pro =2.030=hab24e00_0
font-ttf-ubuntu =0.83=hab24e00_0
fontconfig =2.13.1=hd23ceaa_1004
fonts-conda-ecosystem =1=0
fonts-conda-forge =1=0
freetype =2.10.4=h4cff582_1
fribidi =1.0.10=hbcb3906_0
ftputil =4.0.0=py_0
gdk-pixbuf =2.42.2=h976c81d_2
gettext =0.19.8.1=h7937167_1005
ghostscript =9.53.3=h2e338ed_2
giflib =5.2.1=hbcb3906_2
gitdb =4.0.5=py_0
gitpython =3.1.12=pyhd3eb1b0_1
glib =2.66.4=h54c7649_1
google-api-core =1.24.1=pyhd3deb0d_0
google-api-python-client =1.12.8=pyhd3deb0d_0
google-auth =1.24.0=pyhd3eb1b0_0
google-auth-httplib2 =0.0.4=pyh9f0ad1d_0
google-cloud-core =1.5.0=pyhd3eb1b0_0
google-cloud-storage =1.35.0=pyhd3eb1b0_0
google-crc32c =1.1.1=py36h9ed2024_0
google-resumable-media =1.2.0=pyhd3eb1b0_1
googleapis-common-protos =1.52.0=py36h79c6626_1
graphite2 =1.3.14=h38d11af_0
graphviz =2.42.3=h055b950_2
gtk2 =2.24.33=h55c0dba_0
gts =0.7.6=hbf8be60_2
harfbuzz =2.7.4=hf28d55f_0
htslib =1.11=h422799e_1
icu =68.1=h74dc148_0
idna =2.10=pyh9f0ad1d_0
imagemagick =7.0.10_28=pl5262h1b3d56a_4
importlib-metadata =3.4.0=py36h79c6626_0
importlib_metadata =3.4.0=hd8ed1ab_0
ipython_genutils =0.2.0=py36_0
jbig =2.1=h0b31af3_2002
jmespath =0.10.0=pyh9f0ad1d_0
jpeg =9d=hbcb3906_0
jsonschema =3.2.0=py36_1
jupyter_core =4.7.0=py36hecd8cb5_0
kiwisolver =1.3.1=py36h615c93b_1
krb5 =1.17.2=h60d9502_0
lcms2 =2.11=hdc706ca_1
libblas =3.9.0=7_openblas
libcblas =3.9.0=7_openblas
libcrc32c =1.1.1=hb1e8313_2
libcurl =7.71.1=h9bf37e3_8
libcxx =11.0.0=h4c3b8ed_1
libdeflate =1.6=h0b31af3_0
libedit =3.1.20191231=hed1e85f_2
libev =4.33=haf1e3a3_1
libffi =3.3=hb1e8313_2
libgfortran =4.0.0=7_5_0_h1a10cd1_16
libgfortran4 =7.5.0=h1a10cd1_16
libglib =2.66.4=ha480d04_1
libiconv =1.16=haf1e3a3_0
liblapack =3.9.0=7_openblas
libnghttp2 =1.41.0=h7580e61_2
libopenblas =0.3.12=openmp_h63d9170_1
libpng =1.6.37=hb0a8c7a_2
libprotobuf =3.14.0=hfd3ada9_0
librsvg =2.50.2=hd7f2164_2
libsodium =1.0.18=hbcb3906_1
libssh2 =1.9.0=h39bdce6_5
libtiff =4.2.0=h355d032_0
libwebp =1.1.0=hd89b0c2_4
libwebp-base =1.1.0=hbcb3906_3
libxcb =1.13=h35c211d_1003
libxml2 =2.9.10=h802ca4f_3
llvm-openmp =11.0.1=h7c73e74_0
logomaker =0.8=pyh864c0ab_1
lz4-c =1.9.3=h046ec9c_0
markupsafe =1.1.1=py36h20b66c6_3
matplotlib =3.3.3=py36h79c6626_0
matplotlib-base =3.3.3=py36hbcb57cb_0
mosdepth =0.3.1=h57b381e_0
multidict =5.1.0=py36h9ed2024_2
nbformat =5.1.2=pyhd3eb1b0_1
ncurses =6.2=h2e338ed_4
networkx =2.5=py_0
numpy =1.19.5=py36h08dc641_1
oauth2client =4.1.3=py_0
olefile =0.46=py36_0
openjdk =11.0.8=hb0a8c7a_0
openjpeg =2.4.0=h6cbf5cd_0
openssl =1.1.1i=h35c211d_0
pandas =1.1.5=py36hb2f4e1b_0
pango =1.42.4=ha86e081_5
paramiko =2.7.2=pyh9f0ad1d_0
patsy =0.5.1=py36_0
pcre =8.44=hb1e8313_0
perl =5.26.2=hbcb3906_1008
pigz =2.4=ha441bb4_0
pip =20.3.3=py36hecd8cb5_0
pixman =0.40.0=hbcb3906_0
pkg-config =0.29.2=hb849cc2_1008
prettytable =2.0.0=pyhd8ed1ab_0
protobuf =3.14.0=py36h22858aa_1
psutil =5.8.0=py36h20b66c6_1
pthread-stubs =0.4=hc929b4f_1001
pulp =2.3.1=py36h9f0ad1d_0
pyasn1 =0.4.8=py_0
pyasn1-modules =0.2.8=py_0
pycparser =2.20=pyh9f0ad1d_2
pygments =2.7.4=pyhd8ed1ab_0
pygraphviz =1.6=py36hc017930_1
pynacl =1.4.0=py36h20b66c6_2
pyopenssl =20.0.1=pyhd3eb1b0_1
pyparsing =2.4.7=pyh9f0ad1d_0
pyrsistent =0.17.3=py36h20b66c6_2
pysam =0.16.0.1=py36h623959b_1
pysftp =0.2.9=py36_0
pysocks =1.7.1=py36h79c6626_3
python =3.6.12=h26836e1_2
python-dateutil =2.8.1=py_0
python-irodsclient =0.8.2=py_0
python_abi =3.6=1_cp36m
pytz =2020.5=pyhd8ed1ab_0
pyyaml =5.3.1=py36h20b66c6_2
ratelimiter =1.2.0=py36h9f0ad1d_1001
readline =8.0=h0678c8f_2
requests =2.25.1=pyhd3eb1b0_0
rsa =4.7=pyhd3eb1b0_1
s3transfer =0.3.4=pyhd8ed1ab_0
samtools =1.11=h725deca_0
scipy =1.5.3=py36hca8f76d_0
seaborn =0.11.1=h694c41f_0
seaborn-base =0.11.1=pyhd8ed1ab_0
seqtk =1.3=h2573ce8_2
setuptools =51.1.2=py36hecd8cb5_4
simplejson =3.17.2=py36h20b66c6_2
six =1.15.0=py36hecd8cb5_0
slacker =0.14.0=py_0
smmap =3.0.4=pyh9f0ad1d_0
snakemake =5.31.1=0
snakemake-minimal =5.31.1=py_0
sqlite =3.34.0=h17101e1_0
statsmodels =0.12.1=py36h809c706_2
tbb =2020.3=h879752b_0
tk =8.6.10=hb0a8c7a_1
toposort =1.6=pyhd8ed1ab_0
tornado =6.1=py36h20b66c6_1
traitlets =4.3.3=py36h9f0ad1d_1
typing_extensions =3.7.4.3=py_0
uritemplate =3.0.1=py_0
varscan =2.4.4=0
wcwidth =0.2.5=pyh9f0ad1d_2
wheel =0.36.2=pyhd3eb1b0_0
wrapt =1.12.1=py36h20b66c6_3
xmlrunner =1.7.7=py_0
xopen =1.0.1=py36h79c6626_1
xorg-kbproto =1.0.7=h35c211d_1002
xorg-libice =1.0.10=h01d97ff_0
xorg-libsm =1.2.3=h1de35cc_1000
xorg-libx11 =1.6.12=haf1e3a3_0
xorg-libxau =1.0.9=h35c211d_0
xorg-libxdmcp =1.1.3=h35c211d_0
xorg-libxext =1.3.4=h01d97ff_0
xorg-libxrender =0.9.10=h1de35cc_1002
xorg-libxt =1.2.0=h01d97ff_0
xorg-renderproto =0.11.1=h1de35cc_1002
xorg-xextproto =7.3.0=h35c211d_1002
xorg-xproto =7.0.31=h35c211d_1007
xz =5.2.5=haf1e3a3_1
yaml =0.2.5=haf1e3a3_0
yarl =1.5.1=py36haf1e3a3_0
zipp =3.4.0=pyhd3eb1b0_0
zlib =1.2.11=h7795811_1010
zstd =1.4.8=hf387650_1