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GitHub / glasgowcompbio / vimms
A programmable and modular LC/MS simulator in Python
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/glasgowcompbio%2Fvimms
Stars: 17
Forks: 7
Open Issues: 11
License: mit
Language: Python
Repo Size: 235 MB
Dependencies:
249
Created: almost 4 years ago
Updated: about 2 months ago
Last pushed: 17 days ago
Last synced: 17 days ago
Commit Stats
Commits: 1032
Authors: 10
Mean commits per author: 103.2
Development Distribution Score: 0.573
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/glasgowcompbio/vimms
Topics: dda, fragmentation, metabolomics, python, simulation
Files
Dependencies
- build * develop
- mkdocs * develop
- mkdocstrings * develop
- twine * develop
- autopep8 *
- events *
- flake8 *
- gpy *
- intervaltree *
- ipyparallel *
- ipywidgets *
- joblib *
- jsonpickle *
- jupyterlab *
- loguru *
- mass-spec-utils *
- matplotlib *
- networkx *
- numpy *
- pandas *
- pipenv-setup *
- psims *
- pymzml ==2.4.7
- pysmiles *
- pytest *
- pytest-cov *
- requests *
- scikit-learn *
- scipy *
- seaborn *
- statsmodels *
- tabulate *
- tqdm *
- Babel ==2.9.1
- Cerberus ==1.3.4
- Cython ==0.29.24
- Events ==0.4
- GPy ==1.10.0
- Jinja2 ==3.0.1
- Markdown ==3.3.4
- MarkupSafe ==2.0.1
- Pillow ==8.3.2
- PyYAML ==5.4.1
- Pygments ==2.10.0
- QtPy ==1.9.0
- SQLAlchemy ==1.4.23
- SecretStorage ==3.3.1
- Send2Trash ==1.8.0
- anyio ==3.3.1
- appdirs ==1.4.4
- argon2-cffi ==21.1.0
- astunparse ==1.6.3
- async-generator ==1.10
- attrs ==21.2.0
- backcall ==0.2.0
- black ==19.10b0
- bleach ==4.1.0
- build ==0.7.0
- cached-property ==1.5.2
- certifi ==2021.5.30
- cffi ==1.14.6
- chardet ==3.0.4
- charset-normalizer ==2.0.6
- click ==8.0.1
- colorama ==0.4.4
- cryptography ==3.4.8
- cycler ==0.10.0
- debugpy ==1.4.3
- decorator ==5.1.0
- defusedxml ==0.7.1
- distlib ==0.3.2
- docutils ==0.17.1
- entrypoints ==0.3
- flake8 ==3.9.2
- ghp-import ==2.0.1
- greenlet ==1.1.1
- idna ==3.2
- importlib-metadata ==4.8.1
- iniconfig ==1.1.1
- intervaltree ==3.1.0
- ipykernel ==6.4.1
- ipyparallel ==7.0.1
- ipython ==7.27.0
- ipython-genutils ==0.2.0
- ipywidgets ==7.5.1
- jedi ==0.18.0
- jeepney ==0.7.1
- joblib ==1.0.1
- json5 ==0.9.6
- jsonpickle ==2.0.0
- jsonschema ==3.2.0
- jupyter ==1.0.0
- jupyter-client ==7.0.3
- jupyter-console ==6.1.0
- jupyter-core ==4.8.1
- jupyter-server ==1.11.0
- jupyterlab ==3.1.12
- jupyterlab-pygments ==0.1.2
- jupyterlab-server ==2.8.1
- keyring ==23.2.1
- kiwisolver ==1.3.2
- loguru ==0.5.3
- lxml ==4.6.3
- mass-spec-utils ==0.0.12
- matplotlib ==3.4.3
- matplotlib-inline ==0.1.3
- mccabe ==0.6.1
- mergedeep ==1.3.4
- mistune ==0.8.4
- mkdocs ==1.2.2
- mkdocs-autorefs ==0.2.1
- mkdocstrings ==0.15.2
- molmass ==2021.6.18
- more-itertools ==8.4.0
- nbclassic ==0.3.2
- nbclient ==0.5.4
- nbconvert ==6.1.0
- nbformat ==5.1.3
- nest-asyncio ==1.5.1
- networkx ==2.6.3
- notebook ==6.4.4
- numpy ==1.21.2
- orderedmultidict ==1.0.1
- outcome ==1.0.1
- packaging ==20.9
- pandas ==1.3.3
- pandocfilters ==1.5.0
- paramz ==0.9.5
- parso ==0.8.2
- pathspec ==0.9.0
- patsy ==0.5.1
- pbr ==5.6.0
- pep517 ==0.11.0
- pexpect ==4.8.0
- pickleshare ==0.7.5
- pip-shims ==0.5.3
- pipenv-setup ==3.1.1
- pipfile ==0.0.2
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- pluggy ==1.0.0
- prometheus-client ==0.11.0
- prompt-toolkit ==3.0.20
- psims ==0.1.43
- psutil ==5.8.0
- ptyprocess ==0.7.0
- py ==1.10.0
- pyDOE ==0.3.8
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- pycparser ==2.20
- pyflakes ==2.3.1
- pymdown-extensions ==8.2
- pymzml ==2.4.7
- pyparsing ==2.4.7
- pyrsistent ==0.18.0
- pysmiles ==1.0.1
- pytest ==6.2.5
- pytest-cov ==2.12.1
- python-dateutil ==2.8.2
- pytkdocs ==0.11.1
- pytz ==2021.1
- pyyaml-env-tag ==0.1
- pyzmq ==22.3.0
- qtconsole ==4.7.5
- readme-renderer ==29.0
- regex ==2021.8.28
- requests ==2.26.0
- requests-toolbelt ==0.9.1
- requests-unixsocket ==0.2.0
- requirementslib ==1.5.16
- rfc3986 ==1.5.0
- scikit-learn ==0.24.2
- scipy ==1.4.1
- seaborn ==0.11.2
- six ==1.16.0
- sniffio ==1.2.0
- sortedcontainers ==2.4.0
- statsmodels ==0.12.2
- tabulate ==0.8.9
- terminado ==0.12.1
- testpath ==0.5.0
- threadpoolctl ==2.2.0
- toml ==0.10.2
- tomli ==1.2.1
- tomlkit ==0.7.2
- tornado ==6.1
- tqdm ==4.62.2
- traitlets ==5.1.0
- trio ==0.16.0
- twine ==3.4.2
- typed-ast ==1.4.3
- urllib3 ==1.26.6
- vistir ==0.5.2
- watchdog ==2.1.5
- wcwidth ==0.2.5
- webencodings ==0.5.1
- websocket-client ==1.2.1
- widgetsnbextension ==3.5.1
- xlrd ==1.2.0
- zipp ==3.5.0
- events *
- gpy *
- intervaltree *
- ipyparallel *
- joblib *
- jsonpickle *
- loguru *
- mass-spec-utils *
- matplotlib *
- networkx *
- numpy *
- pandas *
- psims *
- pymzml ==2.4.7
- pysmiles *
- requests *
- scikit-learn *
- scipy *
- seaborn *
- statsmodels *
- tabulate *
- tqdm *
- actions/checkout v2 composite
- actions/setup-python v2 composite