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GitHub / griffithlab / civicpy
A python interface for the CIViC db application
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2Fcivicpy
Stars: 8
Forks: 4
Open Issues: 25
License: mit
Language: Python
Repo Size: 79 MB
Dependencies:
166
Created: about 6 years ago
Updated: 27 days ago
Last pushed: 27 days ago
Last synced: 27 days ago
Topics: civic
Files
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Readme
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Dependencies
environment.yml
pypi
- Cython *
- civicpy ==3.0.0
- pandas ==0.24.1
- sphinxcontrib-programoutput *
- sphinxjp.themes.basicstrap *
Pipfile
pypi
- civicpy * develop
- jupyter ~=1.0 develop
- matplotlib ~=2.0 develop
- notebook ~=5.7 develop
- pytest-cov ~=2.7 develop
- python-coveralls ~=2.9 develop
- sphinx * develop
- sphinxcontrib.programoutput * develop
- sphinxjp.themes.basicstrap * develop
- backports-datetime-fromisoformat ~=1.0
- click ==7.0
- deprecation ~=2.1
- networkx ~=2.1
- obonet ==0.2.3
- pandas ~=1.0
- pytest >=3.5
- requests ~=2.18
requirements.txt
pypi
- Click ==7.0
- backports-datetime-fromisoformat *
- deprecation *
- networkx *
- obonet ==0.2.3
- pandas *
- pytest >=3.5
- requests *
requirements_dev.txt
pypi
- jupyter * development
- matplotlib * development
- notebook * development
- pytest-cov * development
- python-coveralls * development
setup.py
pypi
- Click *
- backports-datetime-fromisoformat *
- deprecation *
- networkx *
- obonet *
- pandas *
- pysam *
- requests *
- vcfpy *
.github/workflows/release.yaml
actions
- actions/checkout v2 composite
- actions/checkout v3 composite
- actions/setup-python v2 composite
- docker/build-push-action v3 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
Dockerfile
docker
- python 3.7 build