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GitHub / gtsambos / tskit
The tree sequence toolkit
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtsambos%2Ftskit
Fork of tskit-dev/tskit
Stars: 1
Forks: 0
Open Issues: 0
License: mit
Language: Python
Repo Size: 11.6 MB
Dependencies:
114
Created: over 5 years ago
Updated: 2 months ago
Last pushed: over 1 year ago
Last synced: 2 months ago
Files
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Readme
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Dependencies
.github/workflows/docs.yml
actions
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- styfle/cancel-workflow-action 0.6.0 composite
.github/workflows/release.yml
actions
- actions/checkout v2 composite
- softprops/action-gh-release v1 composite
.github/workflows/tests.yml
actions
- actions/cache v2 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/upload-artifact v2 composite
- codecov/codecov-action v2 composite
- conda-incubator/setup-miniconda v2 composite
- msys2/setup-msys2 v2 composite
- pre-commit/action v3.0.0 composite
- styfle/cancel-workflow-action 0.10.0 composite
.github/workflows/wheels.yml
actions
- actions/checkout v2 composite
- actions/download-artifact v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v2 composite
- pypa/gh-action-pypi-publish master composite
- i386/python 3.7-slim-bullseye build
- biopython ==1.79
- black ==21.12b0
- coverage ==6.5.0
- dendropy ==4.5.2
- flake8 ==5.0.4
- h5py ==3.7.0
- jsonschema ==4.16.0
- kastore ==0.3.2
- lshmm ==0.0.4
- msgpack ==1.0.4
- msprime ==1.2.0
- networkx ==2.6.3
- newick ==1.3.2
- numpy ==1.21.6
- portion ==2.3.0
- pyparsing ==3.0.9
- pysam ==0.19.1
- pytest ==7.1.3
- pytest-cov ==4.0.0
- pytest-xdist ==2.5.0
- svgwrite ==1.4.3
- xmlunittest ==0.5.0
- PyGithub ==1.55
- breathe ==4.34.0
- h5py ==3.7.0
- jsonschema ==3.2.0
- jupyter-book ==0.13.1
- msprime ==1.2.0
- numpy ==1.21.6
- sphinx-argparse ==0.3.1
- sphinx-autodoc-typehints ==1.18.3
- sphinx-issues ==3.0.1
- sphinxcontrib-prettyspecialmethods ==0.1.0
- svgwrite ==1.4.3
- tskit-book-theme ==0.3.2
- jsonschema ==4.16.0 test
- kastore ==0.3.2 test
- msprime ==1.2.0 test
- biopython ==1.79 test
- dendropy ==4.5.2 test
- h5py ==3.7.0 test
- lshmm ==0.0.4 test
- msgpack ==1.0.4 test
- networkx ==2.6.3 test
- newick ==1.3.2 test
- numpy ==1.21.6 test
- portion ==2.3.0 test
- pytest ==7.1.3 test
- pytest-cov ==4.0.0 test
- pytest-xdist ==2.5.0 test
- svgwrite ==1.4.3 test
- xmlunittest ==0.5.0 test
- autodocsumm >=0.2.7 development
- biopython * development
- black * development
- breathe * development
- codecov * development
- coverage * development
- dendropy * development
- flake8 * development
- h5py >=2.6.0 development
- jsonschema >=3.0.0 development
- jupyter-book >=0.12.1 development
- kastore * development
- lshmm * development
- matplotlib * development
- meson >=0.61.0 development
- msgpack >=1.0.0 development
- msprime >=1.0.0 development
- networkx * development
- newick * development
- ninja * development
- numpy * development
- packaging * development
- portion * development
- pre-commit * development
- pydata_sphinx_theme >=0.7.2 development
- pyparsing * development
- pysam * development
- pytest * development
- pytest-cov * development
- pytest-xdist * development
- si-prefix * development
- sphinx ==4.5 development
- sphinx-argparse * development
- sphinx-autodoc-typehints >=1.18.3 development
- sphinx-issues * development
- sphinx-jupyterbook-latex * development
- sphinxcontrib-prettyspecialmethods * development
- svgwrite >=1.1.10 development
- tqdm * development
- tskit-book-theme * development
- xmlunittest * development