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GitHub / iferres / pagoo
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/iferres%2Fpagoo
Stars: 22
Forks: 4
Open Issues: 11
License: None
Language: R
Repo Size: 38.7 MB
Dependencies:
44
Created: over 5 years ago
Updated: about 2 months ago
Last pushed: over 1 year ago
Last synced: about 2 months ago
Commit Stats
Commits: 425
Authors: 1
Mean commits per author: 425.0
Development Distribution Score: 0.0
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/iferres/pagoo
Topics: bioinformatics, microbial-genomics, pangenome, r, r6, rstats
Files
Dependencies
- Biostrings * depends
- R >= 3.5.0 depends
- S4Vectors * depends
- ggplot2 * depends
- BiocGenerics * imports
- DT * imports
- GenomicRanges * imports
- R6 * imports
- dendextend * imports
- ggfortify * imports
- heatmaply * imports
- magrittr * imports
- plotly * imports
- reshape2 * imports
- shiny * imports
- shinyWidgets * imports
- shinydashboard * imports
- vegan * imports
- DECIPHER * suggests
- IRanges * suggests
- ape * suggests
- covr * suggests
- knitr * suggests
- micropan * suggests
- patchwork * suggests
- pegas * suggests
- phangorn * suggests
- rhierbaps * suggests
- rmarkdown * suggests
- testthat * suggests
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite