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GitHub / kipkurui / XGB-TFBSContext
An Ensemble Approach to Elucidating Transcription Factor Binding Specificity and Occupancy
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kipkurui%2FXGB-TFBSContext
Stars: 1
Forks: 0
Open Issues: 0
License: None
Language: Jupyter Notebook
Repo Size: 35.8 MB
Dependencies:
99
Created: over 7 years ago
Updated: almost 5 years ago
Last pushed: over 5 years ago
Last synced: 18 days ago
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Dependencies
requirements.txt
pypi
- BeautifulSoup ==3.2.1
- Cython ==0.24.1
- Jinja2 ==2.8
- MOODS ==1.9.0.post20151120
- MarkupSafe ==0.23
- MySQL-python ==1.2.5
- Pillow >=3.3.2
- PyYAML ==3.11
- Pygments ==2.1.3
- anaconda-client ==1.5.1
- appdirs ==1.4.0
- backports-abc ==0.4
- backports.csv ==1.0.1
- backports.shutil-get-terminal-size ==1.0.0
- backports.ssl-match-hostname ==3.4.0.2
- beautifulsoup4 ==4.5.1
- biokit ==0.2.1
- biopython ==1.67
- bioservices ==1.4.10
- bitarray ==0.8.1
- clyent ==1.2.2
- colorama ==0.3.7
- colormap ==0.9.8
- configparser ==3.5.0b2
- cycler ==0.10.0
- decorator ==4.0.10
- dreamtools ==1.3.0
- easydev ==0.9.14
- fitter ==1.0.4
- functools32 ==3.2.3.post2
- future ==0.15.2
- gevent ==1.1.2
- gimmemotifs ==0.9.0.6
- greenlet ==0.4.10
- grequests ==0.3.0
- h5py ==2.6.0
- ipykernel ==4.3.1
- ipython ==4.2.0
- ipython-genutils ==0.1.0
- ipywidgets ==4.1.1
- jsonschema ==2.5.1
- jupyter ==1.0.0
- jupyter-client ==4.3.0
- jupyter-console ==4.1.1
- jupyter-core ==4.1.0
- kid ==0.9.6
- matplotlib ==1.5.1
- mistune ==0.7.2
- nbconvert ==4.2.0
- nbformat ==4.0.1
- nltk ==3.2.1
- notebook >=5.4.1
- numarray ==1.5.2
- numexpr ==2.6.1
- numpy ==1.11.1
- oauthlib ==2.0.0
- pandas ==0.18.1
- path.py ==0.0.0
- pathlib2 ==2.1.0
- patsy ==0.4.1
- pexpect ==4.0.1
- pickleshare ==0.7.2
- ptyprocess ==0.5.1
- pyBigWig ==0.2.8
- pybedtools ==0.7.7
- pycairo ==1.10.0
- pymc ==2.3.6
- pyparsing ==2.1.4
- pysam ==0.9.1.4
- python-dateutil ==2.5.3
- pytz ==2016.4
- pyzmq ==15.2.0
- qtconsole ==4.2.1
- requests >=2.20.0
- requests-cache ==0.4.10
- requests-oauthlib ==0.7.0
- rpy2 ==2.8.1
- scikit-learn ==0.17.1
- scipy ==0.17.1
- seaborn ==0.7.0
- simplegeneric ==0.8.1
- simplejson ==3.10.0
- singledispatch ==3.4.0.3
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- sklearn-contrib-lightning ==0.2.dev0
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- terminado ==0.6
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- vincent ==0.4.4
- wrapt ==1.10.6
- xgboost ==0.6
- xlrd ==1.0.0