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GitHub / krassowski / drug-disease-profile-matching
Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
Stars: 15
Forks: 2
Open Issues: 0
License: mit
Language: Jupyter Notebook
Repo Size: 6.86 MB
Dependencies:
42
Created: over 5 years ago
Updated: about 2 months ago
Last pushed: about 4 years ago
Last synced: about 2 months ago
Topics: drug-discovery, drug-repurposing, gct, l1000, lincs, multi-omics, stratification
Funding links: https://github.com/sponsors/krassowski
Files
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Readme
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Dependencies
requirements.txt
pypi
- BioPython *
- cmapPy *
- colorzero *
- dataclasses *
- diskcache *
- enhanced_multiprocessing *
- gsea_api *
- h5py *
- inflect *
- ipympl *
- ipython *
- ipywidgets *
- jupyter-helpers *
- jupyterlab *
- lxml *
- matplotlib *
- nbimporter *
- nimfa *
- numba *
- numpy *
- pandas *
- plotly *
- plotnine *
- psycopg2-binary *
- pyensembl *
- pyfaidx *
- pygments *
- pytest *
- rpy2 *
- scikit-fusion *
- scikit-plot *
- scipy *
- seaborn *
- sklearn *
- snakeviz *
- sqlalchemy *
- sqlalchemy_schemadisplay *
- sqlalchemy_utils *
- statsmodels *
- tqdm *
- tzlocal *
- xlrd *