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GitHub / lawremi / rtracklayer
R interface to genome annotation files and the UCSC genome browser
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lawremi%2Frtracklayer
Stars: 26
Forks: 15
Open Issues: 37
License: other
Language: C
Repo Size: 15.7 MB
Dependencies:
28
Created: over 6 years ago
Updated: 19 days ago
Last pushed: 19 days ago
Last synced: 19 days ago
Commit Stats
Commits: 1185
Authors: 31
Mean commits per author: 38.23
Development Distribution Score: 0.492
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/lawremi/rtracklayer
Files
Dependencies
- GenomicRanges >= 1.37.2 depends
- R >= 3.3 depends
- methods * depends
- BiocGenerics >= 0.35.3 imports
- BiocIO * imports
- Biostrings >= 2.47.6 imports
- GenomeInfoDb >= 1.15.2 imports
- GenomicAlignments >= 1.15.6 imports
- IRanges >= 2.13.13 imports
- RCurl >= 1.4 imports
- Rsamtools >= 1.31.2 imports
- S4Vectors >= 0.23.18 imports
- XML >= 1.98 imports
- XVector >= 0.19.7 imports
- restfulr >= 0.0.13 imports
- tools * imports
- zlibbioc * imports
- BSgenome >= 1.33.4 suggests
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- GenomicFeatures * suggests
- RUnit * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- genefilter * suggests
- hgu133plus2.db * suggests
- humanStemCell * suggests
- limma * suggests
- microRNA >= 1.1.1 suggests
- org.Hs.eg.db * suggests