zlibbioc | cran | Package Usage | Ecosyste.ms: Repos

RGLab/ncdfFlow

A package that provides ncdf based storage for flow cytometry data.

* DESCRIPTION

Size: 4.84 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

grunwaldlab/metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

* DESCRIPTION

Size: 108 MB - Last synced: 2 months ago - Pushed: 3 months ago

lawremi/rtracklayer

R interface to genome annotation files and the UCSC genome browser

* DESCRIPTION

Size: 15.7 MB - Last synced: 27 days ago - Pushed: 27 days ago

dandante/oligo

oligo R/BioConductor package

* DESCRIPTION

Size: 24.1 MB - Last synced: 7 months ago - Pushed: almost 12 years ago

Bioconductor/VariantAnnotation

Annotation of Genetic Variants

* DESCRIPTION

Size: 3.67 MB - Last synced: 24 days ago - Pushed: about 1 month ago

mritchielab/FLAMES

A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.

* DESCRIPTION

Size: 93.3 MB - Last synced: 12 days ago - Pushed: about 2 months ago

statOmics/MSqRob

Robust statistical inference for quantitative LC-MS proteomics

* DESCRIPTION

Size: 14.6 MB - Last synced: 8 months ago - Pushed: over 1 year ago

r-pkg-team/r-bioc-rhtslib

HTSlib high-throughput sequencing library as GNU R package

* DESCRIPTION

Last synced: over 1 year ago

r-pkg-team/r-bioc-rsamtools

r-bioc-rsamtools packaging

* DESCRIPTION

Last synced: over 1 year ago

r-pkg-team/r-bioc-variantannotation

r-bioc-variantannotation packaging

* DESCRIPTION

Last synced: over 1 year ago

r-pkg-team/r-bioc-shortread

r-bioc-shortread packaging

* DESCRIPTION

Last synced: over 1 year ago

r-pkg-team/r-bioc-xvector

r-bioc-xvector packaging

* DESCRIPTION

Last synced: over 1 year ago

r-pkg-team/r-bioc-snpstats

r-bioc-snpstats packaging

* DESCRIPTION

Last synced: over 1 year ago

r-pkg-team/r-bioc-affyio

r-bioc-affyio packaging

* DESCRIPTION

Last synced: over 1 year ago

r-pkg-team/r-bioc-makecdfenv

r-bioc-makecdfenv packaging

* DESCRIPTION

Last synced: over 1 year ago

r-pkg-team/r-bioc-affy

r-bioc-affy packaging

* DESCRIPTION

Last synced: over 1 year ago

BitSeq/BitSeq-BioC-old

BitSeq Bioconductor package

* DESCRIPTION

Size: 1.26 MB - Last synced: 8 months ago - Pushed: about 9 years ago

lucasnell/jackalope

A swift, versatile phylogenomic and high-throughput sequencing simulator

* DESCRIPTION

Size: 3.5 MB - Last synced: 29 days ago - Pushed: 6 months ago

Przemol/seqplots_osx

SeqPlots OS X package

* SeqPlots.app/Contents/Resources/Rbin/Versions/3.2/Resources/library/Rsamtools/DESCRIPTION
* SeqPlots.app/Contents/Resources/Rbin/Versions/3.2/Resources/library/XVector/DESCRIPTION

Size: 502 MB - Last synced: about 1 year ago - Pushed: over 7 years ago

wokai/seqTools

Development repository for Bioconductor seqTools package

* DESCRIPTION

Size: 124 KB - Last synced: over 1 year ago - Pushed: over 8 years ago

Baytars/oligo

* DESCRIPTION

Last synced: over 1 year ago

lamortenera/bamsignals

R package to quickly obtain count vectors from indexed bam files

* DESCRIPTION

Size: 5.94 MB - Last synced: 23 days ago - Pushed: over 2 years ago

imadcat/rhdf5

An unofficial fork of the R rhdf5 package developed by Bernd Fischer and Gregoire Pau. This fork is based on rhdf5 version 2.10.0

* DESCRIPTION
* DESCRIPTION

Size: 5.08 MB - Last synced: about 1 month ago - Pushed: over 9 years ago

girke-lab/ChemmineOB-release

bioconductor 2.14

* DESCRIPTION

Size: 1.34 MB - Last synced: 24 days ago - Pushed: almost 10 years ago

bmbolstad/affyPLM

* DESCRIPTION

Size: 2.57 MB - Last synced: 25 days ago - Pushed: over 1 year ago

fmicompbio/mutscan

Software to process, statistically analyse and visualise deep mutational scanning data

* DESCRIPTION

Size: 11.6 MB - Last synced: about 23 hours ago - Pushed: about 24 hours ago

patperry/rhdf5

Extremely unofficial fork of Bernd Fischer's "rhdf5" package (http://www.bioconductor.org/packages/2.12/bioc/html/rhdf5.html).

* DESCRIPTION

Size: 2.8 MB - Last synced: about 1 year ago - Pushed: over 11 years ago

mzytnicki/msscaf

Multiple-source scaffolder

* DESCRIPTION

Size: 3.31 MB - Last synced: 9 months ago - Pushed: over 1 year ago

This is a read-only mirror of the Bioconductor SVN repository. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=VariantAnnotation. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/VariantAnnotation

* DESCRIPTION

Size: 3.57 MB - Last synced: 8 months ago - Pushed: about 4 years ago

sosoc/croc

Ocean colour with R

* DESCRIPTION

Size: 77.3 MB - Last synced: about 1 month ago - Pushed: about 6 years ago

r-pkg-team/r-bioc-rtracklayer

r-bioc-rtracklayer packaging

* DESCRIPTION

Last synced: over 1 year ago

smgogarten/VCF_projects

* VariantAnnotation/DESCRIPTION

Size: 2.27 MB - Last synced: 18 days ago - Pushed: over 11 years ago

aberHRML/mzAnnotation

An R package containing tools for putative annotation of accurate m/z from electrospray ionisation mass spectrometry data.

* DESCRIPTION

Size: 58.2 MB - Last synced: 5 months ago - Pushed: over 1 year ago

rnabioco/raer

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

* DESCRIPTION

Size: 19 MB - Last synced: about 2 months ago - Pushed: 3 months ago

girke-lab/ChemmineOB

OpenBabel wrapper package for R

* DESCRIPTION

Size: 1.79 MB - Last synced: 23 days ago - Pushed: 3 months ago

r-pkg-team/r-bioc-oligo

Preprocessing tools for oligonucleotide arrays

* DESCRIPTION

Last synced: over 1 year ago

nhayden/Rsamtools

* DESCRIPTION

Size: 12.1 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago

alexchwong/ompBAM

C++ Library for Parallel BAM processing

* DESCRIPTION
* inst/examples/ompBAMExample/DESCRIPTION

Size: 2.92 MB - Last synced: about 14 hours ago - Pushed: 6 months ago

genome-vendor/r-bioc-rsamtools

Unofficial repo for software vendoring or packaging purposes

* DESCRIPTION

Size: 1.98 MB - Last synced: 7 months ago - Pushed: over 11 years ago

Shians/NanoMethViz

* DESCRIPTION

Size: 12 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

iontorrent/TS

Torrent Suite

* plugin/CustomerSupportArchive/True_loading/rhdf5/DESCRIPTION
* plugin/CustomerSupportArchive/flowErr/lib/Rv2/rhdf5/DESCRIPTION
* plugin/CustomerSupportArchive/flowErr/lib/Rv3/rhdf5/DESCRIPTION

Size: 743 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

cran/SimRAD

:exclamation: This is a read-only mirror of the CRAN R package repository. SimRAD — Simulations to Predict the Number of RAD and GBS Loci

* DESCRIPTION

Size: 19.5 KB - Last synced: 10 months ago - Pushed: about 8 years ago

datascience-mobi-2022/2022-topic-04-team-04

* .Archived_files/affy/DESCRIPTION

Size: 1.54 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago

ChangqingW/FLAMES-R Fork of mritchielab/FLAMES

* DESCRIPTION

Size: 87.6 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

ykong2/MADSEQ

MADSEQ-R package for mosaic aneuploidy detection

* DESCRIPTION

Size: 45.2 MB - Last synced: 12 days ago - Pushed: about 6 years ago

maximilian-aigner/pdm

* packages/snpStats/DESCRIPTION

Size: 109 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago

Bioconductor/Rhtslib

HTSlib high-throughput sequencing library as an R package

* DESCRIPTION

Size: 9.12 MB - Last synced: 24 days ago - Pushed: about 1 month ago

nadhir/find

FIND: difFerential chromatin INteractions Detection using a spatial Poisson process

* DESCRIPTION

Size: 3.85 MB - Last synced: over 1 year ago

alyssafrazee/polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.

* DESCRIPTION

Size: 4.88 MB - Last synced: 8 months ago - Pushed: over 2 years ago

NikNakk/snpStats

* DESCRIPTION

Size: 6.57 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

r-pkg-team/r-bioc-chemmineob

GNU R interface to a subset of OpenBabel functionalities

* DESCRIPTION

Last synced: over 1 year ago

satishgaurav/discoverapp_rubiustx

* packrat/lib/x86_64-pc-linux-gnu/3.6.3/XVector/DESCRIPTION

Size: 817 MB - Last synced: over 1 year ago

Bioconductor/ShortRead

* DESCRIPTION

Size: 7.13 MB - Last synced: 24 days ago - Pushed: about 1 month ago

mzytnicki/HiCDOC Fork of chbk/HiCDOC

Hi-C detection of compartments

* DESCRIPTION

Size: 75 MB - Last synced: 13 days ago - Pushed: 3 months ago

Bioconductor/Rsamtools

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

* DESCRIPTION

Size: 13.8 MB - Last synced: 24 days ago - Pushed: about 1 month ago

Sun-lab/isoform

estimation isoform expression and differential expression testing

* isoform/DESCRIPTION

Size: 9.54 MB - Last synced: 10 months ago - Pushed: over 4 years ago

jgoldmann/VariantAnnotation Fork of mtmorgan/VariantAnnotation

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/VariantAnnotation.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=VariantAnnotation.

* DESCRIPTION

Size: 2.31 MB - Last synced: over 1 year ago - Pushed: almost 9 years ago

scchess/affy

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/affy.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=affy.

* DESCRIPTION

Size: 5.79 MB - Last synced: 7 months ago - Pushed: about 7 years ago

PeterUlz/PlasmaSeq

Analyze CNVs of ctDNA

* R/x86_64-pc-linux-gnu-library/2.14/Rsamtools/DESCRIPTION

Size: 191 MB - Last synced: 8 months ago - Pushed: over 7 years ago

hclimente/snpStats

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/snpStats.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=snpStats.

* DESCRIPTION

Size: 21.7 MB - Last synced: 8 months ago - Pushed: about 7 years ago

aeron15/DiffBind

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DiffBind.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DiffBind.

* DESCRIPTION

Size: 16.1 MB - Last synced: 7 months ago - Pushed: over 8 years ago

compbiocore/qckitfastq

Quality Control toolkit for FASTQ files

* DESCRIPTION

Size: 4.43 MB - Last synced: 4 days ago - Pushed: over 4 years ago

cran/metacoder

:exclamation: This is a read-only mirror of the CRAN R package repository. metacoder — Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data. Homepage: https://grunwaldlab.github.io/metacoder_documentation/ Report bugs for this package: https://github.com/grunwaldlab/metacoder/issues

* DESCRIPTION

Size: 4.54 MB - Last synced: 3 months ago - Pushed: 3 months ago

rpolicastro/DiffBind Fork of aeron15/DiffBind

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DiffBind.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DiffBind.

* DESCRIPTION

Size: 16.1 MB - Last synced: over 1 year ago - Pushed: over 8 years ago

jimhester/Rhtslib Fork of nhayden/Rhtslib

R wrapper for htslib for high-throughput sequence analysis

* DESCRIPTION

Size: 1.92 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

al2na/bamsignals Fork of lamortenera/bamsignals

R package to quickly obtain count vectors from indexed bam files

* DESCRIPTION

Size: 3.91 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

alexchwong/ompBench

Benchmarking ompBAM vs Rhtslib

* DESCRIPTION

Size: 15.6 KB - Last synced: 24 days ago - Pushed: over 1 year ago

javrodriguez/DiffBind Fork of aeron15/DiffBind

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DiffBind.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DiffBind.

* DESCRIPTION

Size: 16.1 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

javrodriguez/oligo Fork of dandante/oligo

oligo R/BioConductor package

* DESCRIPTION

Size: 24.3 MB - Last synced: about 1 year ago - Pushed: almost 10 years ago

cran/rang

:exclamation: This is a read-only mirror of the CRAN R package repository. rang — Reconstructing Reproducible R Computational Environments. Homepage: https://github.com/gesistsa/rang Report bugs for this package: https://github.com/gesistsa/rang/issues

* tests/testdata/fakeRhtslib/DESCRIPTION

Size: 562 KB - Last synced: 8 months ago - Pushed: 8 months ago

dtenenba/Rsamtools Fork of mtmorgan/Rsamtools

* DESCRIPTION

Size: 12.2 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

hjanime/TransView Fork of ju-mu/TransView

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/TransView.html Contributions: http://bioconductor.org/packages/release/bioc/html/TransView.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=TransView.

* DESCRIPTION

Size: 3.02 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

teyden/asthma-research

* packrat/lib/x86_64-apple-darwin18.2.0/3.5.2/XVector/DESCRIPTION

Size: 572 MB - Last synced: 9 months ago - Pushed: over 4 years ago

mtmorgan/rhdf5

Package Homepage: http://bioconductor.org/packages/devel/bioc/html/rhdf5.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=rhdf5.

* DESCRIPTION

Size: 10.2 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago

biomedbigdata/polyester

* DESCRIPTION

Size: 4.88 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

ComputationalRegulatoryGenomicsICL/rtracklayer

Fork of Bioconductor package rtracklayer for development.

* DESCRIPTION

Size: 11.9 MB - Last synced: 7 months ago - Pushed: about 8 years ago

Xiaojieqiu/Rhdf5lib

* DESCRIPTION

Size: 12.8 MB - Last synced: 3 months ago - Pushed: almost 7 years ago

Bioconductor/affy 📦

:warning: archived

* DESCRIPTION

Size: 5.77 MB - Last synced: 24 days ago - Pushed: 11 months ago

dtenenba/ShortRead

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ShortRead.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ShortRead.

* DESCRIPTION

Size: 7 MB - Last synced: 8 months ago - Pushed: about 8 years ago

GenomicsNX/DiffBind Fork of rescalante-lilly/DiffBind

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DiffBind.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DiffBind. User Guide: http://bioconductor.org/packages/release/bioc/vignettes/DiffBind/inst/doc/DiffBind.pdf