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GitHub / metabolomics-us / mona

MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spectral records. The MoNA server is a set of Spring microservices written in Scala and Java utilizing MongoDB and ElasticSearch for data storage and RabbitMQ for messaging. The front-end is an Angular 10 web application that communicates with the server through REST endpoints.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/metabolomics-us%2Fmona

Stars: 12
Forks: 0
Open Issues: 6

License: lgpl-3.0
Language: Scala
Repo Size: 174 MB
Dependencies: 1,666

Created: about 3 years ago
Updated: 18 days ago
Last pushed: 6 months ago
Last synced: 10 days ago

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Dependencies

backend/app/server/proxy/pom.xml maven

backend/core/amqp/pom.xml maven

backend/core/auth/api/pom.xml maven

backend/core/auth/jwt/pom.xml maven

backend/core/bootstrap/pom.xml maven

backend/core/client/pom.xml maven

backend/core/curation/pom.xml maven

backend/core/discovery/pom.xml maven

backend/core/domain/pom.xml maven

com.fasterxml.jackson.module:jackson-module-scala_2.13
com.typesafe.scala-logging:scala-logging_2.13
de.erichseifert.gral:gral-core 0.11
javax.el:javax.el-api 2.2.4
net.logstash.logback:logstash-logback-encoder 4.7
org.codehaus.janino:janino 2.7.8
org.glassfish.web:javax.el 2.2.4
org.hibernate:hibernate-validator 5.2.4.Final
org.springframework.boot:spring-boot-starter
org.springframework.data:spring-data-elasticsearch
org.springframework.data:spring-data-mongodb
org.springframework:spring-web
junit:junit test
org.springframework:spring-test test

backend/core/rest/api-server/pom.xml maven

backend/core/rest/auth-server/pom.xml maven

backend/core/rest/persistence-server/pom.xml maven

backend/core/statistics/pom.xml maven

backend/core/workflow/pom.xml maven

backend/pom.xml maven

org.springframework.cloud:spring-cloud-dependencies Camden.SR7 import
com.github.rutledgepaulv:q-builders 1.4
com.github.rutledgepaulv:rest-query-engine 0.6.3-SNAPSHOT-GERT
edu.ucdavis.fiehnlab.mona.backend.core.auth:api 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core.auth:jwt 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core.io:massbank 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core.persistence:elastic 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core.persistence:mongo 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core.persistence:rsql 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core.persistence:service 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core.rest:api-server 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core.rest:persistence-server 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core:amqp 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core:auth 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core:client 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core:curation 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core:domain 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core:persistence 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core:statistics 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.core:workflow 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.services:downloader 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.mona.backend.services:webhooks-server 1.6-SNAPSHOT
edu.ucdavis.fiehnlab.splash:core 1.8
io.springfox:springfox-swagger-ui 2.7.0
io.springfox:springfox-swagger2 2.7.0
org.openscience.cdk:cdk-bundle 2.7.1
org.springframework.data:spring-data-mongodb 1.9.5.RELEASE
edu.ucdavis.fiehnlab.mona.backend.core.persistence:elastic 1.6-SNAPSHOT test
edu.ucdavis.fiehnlab.mona.backend.core.persistence:rsql 1.6-SNAPSHOT test
edu.ucdavis.fiehnlab.mona.backend.core.rest:api-server 1.6-SNAPSHOT test
edu.ucdavis.fiehnlab.mona.backend.core.rest:auth-server 1.6-SNAPSHOT test
edu.ucdavis.fiehnlab.mona.backend.core.rest:persistence-server 1.6-SNAPSHOT test
edu.ucdavis.fiehnlab.mona.backend.core:domain 1.6-SNAPSHOT test

backend/services/curation-runner/pom.xml maven

backend/services/curation-scheduler/pom.xml maven

backend/services/download-scheduler/pom.xml maven

backend/services/downloader/pom.xml maven

backend/services/similarity/pom.xml maven

backend/services/webhooks-server/pom.xml maven

pom.xml maven

org.springframework.cloud:spring-cloud-dependencies Camden.SR7 import
com.fasterxml.jackson.core:jackson-core 2.13.1
com.fasterxml.jackson.module:jackson-module-scala_2.13 2.13.1
com.mangofactory:swagger-springmvc 1.0.2
com.typesafe.akka:akka-actor_2.13 2.6.17
com.typesafe.scala-logging:scala-logging_2.13 3.9.4
edu.ucdavis.fiehnlab.utilities:compress 1.0-SNAPSHOT
io.spray:spray-client_2.13 1.3.5
io.spray:spray-json_2.13 1.3.5
log4j:log4j 1.2.17
org.scala-lang.modules:scala-java8-compat_2.13 1.0.0
com.jayway.restassured:rest-assured 2.8.0 test
junit:junit 4.13 test

backend/core/config/pom.xml maven

org.springframework.cloud:spring-cloud-config-server

backend/core/persistence/postgresql/pom.xml maven

backend/app/server/proxy/package.json npm

@angular-devkit/build-angular ~0.1002.3 development
@angular/cli ~10.2.3 development
@angular/compiler-cli ~10.2.4 development
@types/jasmine ~3.5.0 development
@types/jasminewd2 ~2.0.3 development
@types/node ^12.11.1 development
codelyzer ^6.0.0 development
jasmine-core ~3.6.0 development
jasmine-spec-reporter ~5.0.0 development
karma ~5.0.0 development
karma-chrome-launcher ~3.1.0 development
karma-coverage-istanbul-reporter ~3.0.2 development
karma-jasmine ~4.0.0 development
karma-jasmine-html-reporter ^1.5.0 development
protractor ~7.0.0 development
ts-node ~8.3.0 development
tslint ~6.1.0 development
typescript ~4.0.2 development
@angular/animations ~10.2.4
@angular/common ~10.2.4
@angular/compiler ~10.2.4
@angular/core ~10.2.4
@angular/forms ~10.2.4
@angular/localize ^12.0.5
@angular/platform-browser ~10.2.4
@angular/platform-browser-dynamic ~10.2.4
@angular/router ~10.2.4
@fortawesome/angular-fontawesome ^0.7.0
@fortawesome/fontawesome-svg-core ^1.2.36
@fortawesome/free-regular-svg-icons ^5.15.4
@fortawesome/free-solid-svg-icons ^5.15.4
@ng-bootstrap/ng-bootstrap ^8.0.4
@wcmc/ng-chemdoodle ^0.1.1
@wcmc/ng-mass-spec-plotter ^0.3.1
angular-cts-service git+https://github.com/metabolomics-us/angular-cts-service.git
angular-massbank-parser git+https://github.com/metabolomics-us/angular-massbank-parser.git
angular-masspec-plotter git+https://github.com/metabolomics-us/angular-masspec-plotter.git
angular-mgf-parser git+https://github.com/metabolomics-us/angular-mgf-parser.git
angular-msp-parser git+https://github.com/metabolomics-us/angular-msp-parser.git
angular2-toaster ~10.0.0
bootstrap ^4.5.3
bootstrap-sass ^3.4.1
cookieconsent ^3.1.1
core-js ^2.4.1
d3 ^3.5.17
flot 0.8.3
jquery 1.9.1
json3 ~3.3.3
ng2-nvd3 ^2.0.0
ngx-chips ^2.2.2
ngx-cookie-service 10.0.1
ngx-cookieconsent ^2.2.3
ngx-google-analytics ^11.2.1
ngx-logger ^4.2.2
paralleljs *
popper.js ^1.16.1
rxjs ~6.6.0
tslib ^2.0.0
zone.js ~0.10.2

backend/docker-compose-dev.yml docker

elasticsearch 2.4
mongo 3.2.4
public.ecr.aws/fiehnlab/mona-auth-server test
public.ecr.aws/fiehnlab/mona-bootstrap test
public.ecr.aws/fiehnlab/mona-curation-runner test
public.ecr.aws/fiehnlab/mona-curation-scheduler test
public.ecr.aws/fiehnlab/mona-discovery test
public.ecr.aws/fiehnlab/mona-download-scheduler test
public.ecr.aws/fiehnlab/mona-persistence-server test
public.ecr.aws/fiehnlab/mona-proxy test
public.ecr.aws/fiehnlab/mona-repository test
public.ecr.aws/fiehnlab/mona-similarity test
public.ecr.aws/fiehnlab/mona-webhooks-server test
rabbitmq 3.6-management

backend/docker-compose-prod.yml docker

elasticsearch 2.4
mongo 3.2.4
public.ecr.aws/fiehnlab/mona-auth-server prod
public.ecr.aws/fiehnlab/mona-bootstrap prod
public.ecr.aws/fiehnlab/mona-curation-runner prod
public.ecr.aws/fiehnlab/mona-curation-scheduler prod
public.ecr.aws/fiehnlab/mona-discovery prod
public.ecr.aws/fiehnlab/mona-download-scheduler prod
public.ecr.aws/fiehnlab/mona-persistence-server prod
public.ecr.aws/fiehnlab/mona-proxy prod
public.ecr.aws/fiehnlab/mona-repository prod
public.ecr.aws/fiehnlab/mona-similarity prod
public.ecr.aws/fiehnlab/mona-webhooks-server latest
public.ecr.aws/fiehnlab/nginx-letsencrypt latest
rabbitmq 3.6-management

backend/docker-compose-test.yml docker

elasticsearch 2.4
mobz/elasticsearch-head 2
mongo 3.2.4
rabbitmq 3.6-management

backend/docker-compose-uat.yml docker

elasticsearch 2.4
mongo 3.2.4
public.ecr.aws/fiehnlab/mona-auth-server latest
public.ecr.aws/fiehnlab/mona-bootstrap latest
public.ecr.aws/fiehnlab/mona-curation-runner latest
public.ecr.aws/fiehnlab/mona-curation-scheduler latest
public.ecr.aws/fiehnlab/mona-discovery latest
public.ecr.aws/fiehnlab/mona-download-scheduler latest
public.ecr.aws/fiehnlab/mona-persistence-server latest
public.ecr.aws/fiehnlab/mona-proxy latest
public.ecr.aws/fiehnlab/mona-repository latest
public.ecr.aws/fiehnlab/mona-similarity latest
public.ecr.aws/fiehnlab/mona-webhooks-server latest
rabbitmq 3.6-management

backend/app/server/proxy/package-lock.json npm

1251 dependencies

package-lock.json npm