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GitHub / metaspace2020 / sm-engine
Engine for metabolite annotation for imaging mass spectrometry
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/metaspace2020%2Fsm-engine
Stars: 6
Forks: 5
Open Issues: 0
License: apache-2.0
Language: Python
Repo Size: 45 MB
Dependencies:
66
Created: about 9 years ago
Updated: over 1 year ago
Last pushed: almost 6 years ago
Last synced: 7 months ago
Topics: bioinformatics, imaging, imaging-mass-spectrometry, mass-spectrometry, metabolomics
Files
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Readme
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Dependencies
- Fabric3 *
- Pillow ==4.2.1
- PyArrow >=0.8.0
- boto3 *
- codecov *
- coverage *
- elasticsearch *
- elasticsearch_dsl *
- mock *
- networkx *
- pika >=0.11.0b1
- py4j *
- pyopenms ==2.2.0
- pypng *
- pysparkling *
- pyyaml *
- recommonmark *
- requests *
- tornado *
- tornpsql *
- Fabric >=1.10.2
- boto3 ==1.3.0
- cpyImagingMSpec *
- cpyMSpec ==0.1.4
- elasticsearch *
- lxml ==3.3.3
- matplotlib ==1.5.3
- mock ==1.3.0
- numpy >=1.10
- numpydoc *
- pandas >=0.18
- pika *
- py4j ==0.9
- pyImagingMSpec *
- pyMSpec *
- pyimzml >=1.0.1
- pyopenms ==2.2.0
- pypng ==0.0.18
- pytest ==2.8.2
- recommonmark *
- tornado ==4.2.1
environment.yml
pypi
- Pillow ==4.2.1
- PyArrow >=0.8.0
- boto3 *
- bottle *
- cpyImagingMSpec ==0.2.4
- cpyMSpec ==0.3.5
- elasticsearch *
- elasticsearch_dsl *
- fabric3 *
- pika >=0.11.0b1
- pyImagingMSpec ==0.1.4
- pyMSpec ==0.1.2
- pyimzML ==1.2.1
- pypng *
- pyspark ==2.3.0
- pysparkling *
- pytest *
- pyyaml *
- recommonmark *
- requests *
setup.py
pypi
- cpyImagingMSpec ==0.2.4
- cpyMSpec ==0.3.5
- pyImagingMSpec ==0.1.4
- pyMSpec ==0.1.2
- pyimzML ==1.2.1