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GitHub / monarch-initiative / ontogpt
LLM-based ontological extraction tools, including SPIRES
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/monarch-initiative%2Fontogpt
Stars: 526
Forks: 65
Open Issues: 82
License: bsd-3-clause
Language: Jupyter Notebook
Repo Size: 58.9 MB
Dependencies:
387
Created: over 1 year ago
Updated: about 15 hours ago
Last pushed: about 15 hours ago
Last synced: about 7 hours ago
Commit Stats
Commits: 845
Authors: 21
Mean commits per author: 40.24
Development Distribution Score: 0.318
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/monarch-initiative/ontogpt
Topics: ai, chat-gpt, data-modeling, gpt-3, information-extraction, language-models, large-language-models, linkml, llm, monarchinitiative, named-entity-recognition, ner, nlp, oaklib, obofoundry, relation-extraction
Files
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
- snok/install-poetry v1.3 composite
- actions/checkout v3.0.2 composite
- actions/setup-python v4 composite
- pypa/gh-action-pypi-publish v1.5.0 composite
- actions/checkout v3.0.2 composite
- actions/setup-python v4 composite
- snok/install-poetry v1.3.1 composite
- mkdocs-mermaid2-plugin ^0.6.0 develop
- pytest ^7.1.2 develop
- setuptools >=65.5.0 develop
- tox ^3.25.1 develop
- Jinja2 ^3.1.2
- SQLAlchemy ^1.4.32, !=1.4.46
- aiohttp ^3.8.4
- airium ^0.2.5
- beautifulsoup4 ^4.11.1
- bioc ^2.0.post5
- cachier ^2.1.0
- class-resolver >=0.4.2
- click ^8.1.3
- eutils ^0.6.0
- fastapi ^0.88.0
- gilda ^0.10.3
- gpt4 ^0.0.1
- greenlet !=2.0.2
- httpx ^0.23.3
- inflect ^6.0.2
- inflection ^0.5.1
- jsonlines ^3.1.0
- langchain ^0.0.167
- linkml ^1.4.10
- linkml-owl ^0.2.7
- linkml-runtime ^1.5.3
- myst-parser ^0.18.1
- nlpcloud ^1.0.39
- oaklib ^0.5.6
- openai ^0.27.4
- pygpt4all ^1.1.0
- python >=3.9,<3.9.7 || >3.9.7,<4.0
- python-multipart ^0.0.5
- recipe-scrapers ^14.35.0
- requests-cache ^1.0.1
- semsimian >=0.1.13
- sphinx ^5.3.0
- sphinx-autodoc-typehints ^1.19.4
- sphinx-click ^4.3.0
- sphinx-rtd-theme ^1.0.0
- streamlit ^1.22.0
- textract *
- tiktoken ^0.3.3
- uvicorn ^0.20.0
- wikipedia ^1.4.0
- wikipedia-api ^0.5.8