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GitHub / msk-access / sequence_qc

Noise calculations from BAM file

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/msk-access%2Fsequence_qc

Stars: 0
Forks: 0
Open Issues: 7

License: other
Language: Python
Repo Size: 1.06 MB
Dependencies: 36

Created: over 4 years ago
Updated: 11 months ago
Last pushed: 11 months ago
Last synced: 18 days ago

Topics: noise-detection

Files

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Readme

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Dependencies

environment.yaml conda

click 7.1.2.*
pandas 1.0.3.*
plotly 4.9.0
pybedtools 0.8.1.*
pyfaidx 0.5.8.*
pysam 0.15.4.*
pysamstats 1.1.2.*
pytest 5.4.2.*
scipy 1.5.0

requirements.txt pypi

click ==7.1.2
pandas *
plotly *
pybedtools ==0.8.1
pyfaidx ==0.5.8
pysam ==0.15.4
pysamstats ==1.1.2
scipy ==1.5.0

requirements_dev.txt pypi

Sphinx ==1.8.5 development
bump2version ==0.5.11 development
coverage ==4.5.4 development
flake8 ==3.7.8 development
importlib-metadata <1,>=0.12 development
pip ==19.2.3 development
pytest ==5.4.2 development
tox ==3.14.0 development
twine ==3.0.0 development
watchdog ==0.9.0 development
wheel ==0.33.6 development

.github/workflows/publish_docker.yml actions

actions/checkout v2 composite
docker/build-push-action v2 composite
docker/login-action v1 composite
docker/setup-buildx-action v1 composite
docker/setup-qemu-action v1 composite

.github/workflows/python-package.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite

Dockerfile docker

python 3.6-slim build