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GitHub / nibscbioinformatics / scranger
scRNAseq Pipeline running Cell Ranger and Seurat
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nibscbioinformatics%2Fscranger
Stars: 1
Forks: 2
Open Issues: 0
License: mit
Language: Nextflow
Repo Size: 237 KB
Dependencies:
18
Created: about 4 years ago
Updated: 7 months ago
Last pushed: over 3 years ago
Last synced: 7 months ago
Files
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Readme
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Dependencies
environment.yml
conda
- fastqc 0.11.8.*
- markdown 3.1.1.*
- multiqc 1.7.*
- pandoc 2.9.2.1.*
- pygments 2.5.2.*
- pymdown-extensions 6.0.*
- python 2.7.15.*
- r 3.6.0.*
- r-knitr 1.22.*
- r-metap 1.1.*
- r-mutoss 0.1_12.*
- r-mvoutlier 2.0.9.*
- r-pander 0.6.3.*
- r-rmarkdown 1.12.*
- r-seurat 3.1.0.*
- r-tidyverse 1.2.1.*
- seqkit 0.12.1.*
- texlive-core 20180414.*