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GitHub / nickp60 / spectra
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nickp60%2Fspectra
Fork of dpeerlab/spectra
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Jupyter Notebook
Repo Size: 23.7 MB
Dependencies:
74
Created: 10 months ago
Updated: 10 months ago
Last pushed: 10 months ago
Last synced: 10 months ago
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Dependencies
environment.yml
pypi
- absl-py ==1.0.0
- anndata ==0.7.8
- appdirs ==1.4.4
- astor ==0.8.1
- astunparse ==1.6.3
- biothings-client ==0.2.6
- brewer2mpl ==1.4.1
- cached-property ==1.5.2
- cachetools ==5.0.0
- charset-normalizer ==2.0.10
- cython ==0.29.28
- datacache ==1.1.5
- fbpca ==1.0
- flatbuffers ==2.0
- gast ==0.2.2
- geosketch ==1.2
- google-auth ==2.5.0
- google-auth-oauthlib ==0.4.6
- google-pasta ==0.2.0
- group-lasso ==1.5.0
- grpcio ==1.43.0
- gtfparse ==1.2.1
- h5py ==3.6.0
- harmonypy ==0.0.5
- idna ==3.3
- intervaltree ==2.1.0
- jax ==0.3.13
- jaxlib ==0.3.10
- jaxopt ==0.4.2
- jsonpickle ==2.1.0
- kern-smooth ==1.1.1
- libclang ==13.0.0
- markdown ==3.3.6
- memoized-property ==1.0.3
- mygene ==3.2.2
- natsort ==8.0.2
- networkx ==2.6.3
- oauthlib ==3.1.1
- pip ==22.1.2
- progressbar33 ==2.4
- protobuf ==3.19.4
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pyensembl ==2.0.0
- pyglmnet ==1.1
- pynndescent ==0.5.6
- pyvis ==0.1.9
- requests ==2.27.1
- requests-oauthlib ==1.3.0
- scanpy ==1.8.2
- scikit-dsdp ==0.0.1
- serializable ==0.2.1
- setuptools ==62.3.3
- simplejson ==3.17.6
- sinfo ==0.3.4
- sortedcontainers ==2.4.0
- stdlib-list ==0.8.0
- termcolor ==1.1.0
- tinytimer ==0.0.0
- tqdm ==4.62.3
- typechecks ==0.1.0
- umap-learn ==0.5.2
- urllib3 ==1.26.8
- werkzeug ==2.0.2
- wrapt ==1.13.3
- xlrd ==1.2.0