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GitHub / not-a-feature / ProteinFlow
Versatile computational pipeline for processing protein structure data for deep learning applications.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/not-a-feature%2FProteinFlow
Fork of adaptyvbio/ProteinFlow
Stars: 0
Forks: 0
Open Issues: 0
License: bsd-3-clause
Language:
Repo Size: 54.4 MB
Dependencies:
30
Created: 11 months ago
Updated: 11 months ago
Last pushed: 11 months ago
Last synced: 11 months ago
Files
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Readme
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Dependencies
.github/workflows/pre-commit.yml
actions
- actions/checkout v3 composite
- actions/setup-python v3 composite
- pre-commit/action v3.0.0 composite
- actions/checkout v3 composite
- actions/github-script 0.9.0 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- christian-korneck/update-container-description-action v1 composite
- conda-incubator/setup-miniconda v2 composite
- docker/login-action v2 composite
- pypa/gh-action-pypi-publish 27b31702a0e7fc50959f5ad993c78deac1bdfc29 composite
Dockerfile
docker
- python 3.10-buster build
pyproject.toml
pypi
- Biopython ==1.79
- aiobotocore ==2.4.2
- awscli ==1.25.60
- biopandas >=0.4.1
- biotite ==0.35.0
- blosum *
- boto3 ==1.24.59
- bs4 >=0.0.1
- click >=8.1.3
- editdistance >=0.6.0
- einops >=0.6.0
- networkx ==2.8.8
- numpy >=1.17
- p_tqdm >=1.4.0
- pandas >=1.5.2
- pre-commit *
- rcsbsearch *
- torch >=1.10.0