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GitHub / omnideconv / immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2Fimmunedeconv
Stars: 406
Forks: 97
Open Issues: 31
License: other
Language: R
Repo Size: 118 MB
Dependencies:
61
Created: about 6 years ago
Updated: 26 days ago
Last pushed: about 1 month ago
Last synced: 21 days ago
Commit Stats
Commits: 440
Authors: 12
Mean commits per author: 36.67
Development Distribution Score: 0.348
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/omnideconv/immunedeconv
Files
Dependencies
- EPIC * depends
- R >= 4.1 depends
- Biobase * imports
- BiocParallel * imports
- ComICS * imports
- ConsensusTME * imports
- MASS * imports
- MCPcounter * imports
- biomaRt * imports
- data.tree >= 0.7 imports
- dplyr >= 0.7 imports
- e1071 >= 1.6 imports
- grDevices * imports
- graphics * imports
- limSolve >= 1.5.5.1 imports
- mMCPcounter * imports
- magrittr >= 1.5 imports
- matrixStats * imports
- methods >= 3.4 imports
- parallel >= 3.4 imports
- preprocessCore * imports
- readr >= 1.1 imports
- readxl >= 1.0 imports
- rlang * imports
- stats * imports
- stringr * imports
- sva * imports
- testit >= 0.7 imports
- tibble >= 1.4.2 imports
- utils * imports
- xCell * imports
- DiagrammeR * suggests
- covr * suggests
- devtools * suggests
- ggplot2 * suggests
- knitr * suggests
- pkgdown * suggests
- rmarkdown * suggests
- testthat * suggests
- tidyr * suggests
- webshot * suggests
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