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GitHub / opencb / biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/opencb%2Fbiodata
Stars: 28
Forks: 34
Open Issues: 50
License: apache-2.0
Language: Java
Repo Size: 10.9 MB
Dependencies:
48
Created: about 10 years ago
Updated: 13 days ago
Last pushed: 13 days ago
Last synced: 13 days ago
Files
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Readme
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Dependencies
biodata-formats/pom.xml
maven
biodata-models/pom.xml
maven
biodata-tools/pom.xml
maven
- com.databricks:SnpEff 4.3.1
- log4j:log4j 1.2.17
- org.biojava:biojava-alignment
- org.opencb.biodata:biodata-formats
- org.opencb.commons:commons-datastore-core
- org.opencb.ga4gh:ga4gh 0.6.0a5
- org.rocksdb:rocksdbjni 4.5.1
- junit:junit test
- org.opencb.biodata:biodata-models 2.5.0-SNAPSHOT test
- org.slf4j:slf4j-simple test
pom.xml
maven
- com.github.samtools:htsjdk 2.23.0
- com.google.protobuf:protobuf-java 3.11.4
- io.grpc:grpc-all 1.28.1
- org.apache.avro:avro 1.7.7
- org.apache.commons:commons-collections4 4.4
- org.biojava:biojava-alignment 4.1.0
- org.opencb.biodata:biodata-formats ${project.parent.version}
- org.opencb.biodata:biodata-models ${project.parent.version}
- org.opencb.commons:commons-datastore-core 4.5.0-SNAPSHOT
- org.opencb.commons:commons-lib 4.5.0-SNAPSHOT
- junit:junit 4.13.2 test
- org.slf4j:slf4j-simple 1.7.32 test
.github/workflows/develop.yml
actions
- actions/checkout v2 composite
- actions/setup-java v3 composite
.github/workflows/release.yml
actions
- actions/checkout v2 composite
- actions/setup-java v3 composite
.github/workflows/task.yml
actions
- actions/checkout v2 composite
- actions/setup-java v3 composite
- actions/checkout v3 composite
- actions/setup-java v3 composite
- scacap/action-surefire-report v1 composite