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GitHub / pamonlan / ExonSurferWeb
ExonSurfer is a Django-based web tool for designing transcript primers using the ExonSurfer python package, Ensembl database, and blastn algorithm. It is user-friendly, fast, and accurate, providing specific primers with low non-specific binding.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pamonlan%2FExonSurferWeb
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Jupyter Notebook
Repo Size: 50.7 MB
Dependencies:
54
Created: over 1 year ago
Updated: about 2 months ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Files
Dependencies
- nginx latest build
- Django ==3.2.18
- SQLAlchemy ==1.4.47
- XlsxWriter ==3.1.0
- appdirs ==1.4.4
- asgiref ==3.4.1
- astroid ==2.11.7
- biopython ==1.79
- certifi ==2021.5.30
- charset-normalizer ==2.0.12
- datacache ==1.2.1
- dill ==0.3.4
- django-crispy-forms ==1.13.0
- django-extensions ==3.2.1
- django-rq ==2.7.0
- gtfparse ==1.3.0
- gunicorn ==20.1.0
- idna ==3.4
- isort ==5.10.1
- lazy-object-proxy ==1.7.1
- mccabe ==0.7.0
- memoized-property ==1.0.3
- mock ==5.0.1
- nose ==1.3.7
- numpy ==1.19.5
- openpyxl ==3.1.1
- pandas ==1.4
- platformdirs ==2.4.0
- plotly ==5.13.0
- primer3-py ==1.2.0
- progressbar33 ==2.4
- psycopg2 ==2.9.5
- pyensembl ==2.2.4
- pylint ==2.13.9
- python-dateutil ==2.8.2
- pytz ==2022.7.1
- regex ==2022.10.31
- requests ==2.27.1
- rq ==1.13.0
- scikit-learn ==0.24.2
- serializable ==0.2.1
- simplejson ==3.18.3
- six ==1.16.0
- sqlparse ==0.4.3
- tenacity ==8.2.1
- tinytimer ==0.0.0
- tomli ==1.2.3
- typechecks ==0.1.0
- typed-ast ==1.5.4
- typing_extensions ==4.1.1
- urllib3 ==1.26.14
- wrapt ==1.14.1