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GitHub / privefl / bigsnpr
R package for the analysis of massive SNP arrays.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/privefl%2Fbigsnpr
Stars: 180
Forks: 43
Open Issues: 22
License: None
Language: R
Repo Size: 106 MB
Dependencies:
41
Created: almost 8 years ago
Updated: 1 day ago
Last pushed: 1 day ago
Last synced: about 20 hours ago
Commit Stats
Commits: 1047
Authors: 13
Mean commits per author: 80.54
Development Distribution Score: 0.064
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/privefl/bigsnpr
Topics: big-data, bioinformatics, memory-mapped-file, parallel-computing, polygenic-scores, population-structure-inference, r, r-package, snp-data, statistical-methods
Files
Dependencies
- R >= 3.3 depends
- bigstatsr >= 1.5.6 depends
- Matrix * imports
- Rcpp * imports
- bigassertr >= 0.1.3 imports
- bigparallelr * imports
- bigreadr * imports
- bigsparser >= 0.6 imports
- bigutilsr >= 0.3.3 imports
- data.table >= 1.12.4 imports
- doRNG * imports
- foreach * imports
- ggplot2 * imports
- magrittr * imports
- methods * imports
- stats * imports
- vctrs * imports
- Hmisc * suggests
- R.utils * suggests
- RSQLite * suggests
- RSpectra * suggests
- RhpcBLASctl * suggests
- bindata * suggests
- covr * suggests
- dbplyr >= 1.4 suggests
- dplyr * suggests
- gaston * suggests
- glue * suggests
- pcadapt >= 4.1 suggests
- quadprog * suggests
- rmutil * suggests
- runonce * suggests
- spelling * suggests
- testthat * suggests
- tibble * suggests
- xgboost * suggests
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite