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GitHub / rcastelo / VariantFiltering
Filter genetic variants using different criteria such as inheritance model, conservation, etc.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2FVariantFiltering
Stars: 4
Forks: 7
Open Issues: 2
License: None
Language: R
Repo Size: 6.13 MB
Dependencies:
37
Created: almost 10 years ago
Updated: 23 days ago
Last pushed: 23 days ago
Last synced: 23 days ago
Commit Stats
Commits: 747
Authors: 25
Mean commits per author: 29.88
Development Distribution Score: 0.653
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/rcastelo/VariantFiltering
Files
Dependencies
- BiocGenerics >= 0.25.1 depends
- R >= 3.5.0 depends
- VariantAnnotation >= 1.13.29 depends
- methods * depends
- AnnotationDbi * imports
- BSgenome * imports
- Biobase * imports
- BiocParallel * imports
- Biostrings >= 2.33.11 imports
- DT * imports
- GenomeInfoDb >= 1.3.6 imports
- GenomicFeatures * imports
- GenomicRanges >= 1.19.13 imports
- GenomicScores >= 1.0.0 imports
- Gviz * imports
- IRanges >= 2.3.23 imports
- RBGL * imports
- Rsamtools >= 1.17.8 imports
- S4Vectors >= 0.9.25 imports
- SummarizedExperiment * imports
- graph * imports
- shiny * imports
- shinyTree * imports
- shinyjs * imports
- shinythemes * imports
- stats * imports
- utils * imports
- BSgenome.Hsapiens.1000genomes.hs37d5 * suggests
- BiocStyle * suggests
- MafDb.1Kgenomes.phase1.hs37d5 * suggests
- PolyPhen.Hsapiens.dbSNP131 * suggests
- RUnit * suggests
- SIFT.Hsapiens.dbSNP137 * suggests
- SNPlocs.Hsapiens.dbSNP144.GRCh37 * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- org.Hs.eg.db * suggests
- phastCons100way.UCSC.hg19 * suggests