Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: cran: RBGL

View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RBGL

Dependent Repos 89

Bioconductor/biocViews
Categorized views of R package repositories
  • >= 1.13.5 DESCRIPTION

Size: 1.47 MB - Last synced: 24 days ago - Pushed: about 1 month ago

EvolEcolGroup/geograph
Interfacing GIS layers and spatial graphs
  • * DESCRIPTION

Size: 98.9 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

cran/RSeed
:exclamation: This is a read-only mirror of the CRAN R package repository. RSeed — Borenstein Analysis
  • * DESCRIPTION

Size: 8.79 KB - Last synced: 8 months ago - Pushed: over 7 years ago

bhklab/predictionet
This package contains a set of functions related to network inference combining genomic data and prior information extracted from biomedical literature and structured biological databases.The main function is able to generate networks using bayesian or regression-based inference methods; while the former is limited to < 100 of variables, the latter may infer network with hundreds of variables. Several statistics at the edge and node levels have been implemented (edge stability, predictive ability of each node, ...) in order to help the user to focus on high quality subnetworks. Ultimately, this package is used in the 'Predictive Networks' web application developed by the Dana-Farber Cancer Institute in collaboration with Entagen
  • * DESCRIPTION

Size: 5.27 MB - Last synced: about 2 months ago - Pushed: over 11 years ago

cbg-ethz/SGS
Inference in Bayesian Networks with R
  • * DESCRIPTION

Size: 5.21 MB - Last synced: 2 months ago - Pushed: over 1 year ago

Accio/KEGGgraph
The KEGGgraph package to parse KEGG pathways in R into graph objects
  • * DESCRIPTION

Size: 3.33 MB - Last synced: 4 days ago - Pushed: 9 months ago

cran/BiDAG
:exclamation: This is a read-only mirror of the CRAN R package repository. BiDAG — Bayesian Inference for Directed Acyclic Graphs
  • * DESCRIPTION

Size: 1.51 MB - Last synced: 8 months ago - Pushed: about 1 year ago

RGLab/flowWorkspace
flowWorkspace
  • * DESCRIPTION

Size: 26.6 MB - Last synced: 3 months ago - Pushed: 3 months ago

RGLab/flowStats
flowStats: algorithms for flow cytometry data analysis using BioConductor tools
  • * DESCRIPTION

Size: 4.16 MB - Last synced: 23 days ago - Pushed: 11 months ago

RGLab/openCyto
A package that provides data analysis pipeline for flow cytometry.
  • * DESCRIPTION

Size: 17.2 MB - Last synced: 18 days ago - Pushed: 18 days ago

saezlab/CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
  • * DESCRIPTION

Size: 18.2 MB - Last synced: 16 days ago - Pushed: about 2 months ago

romanhaa/Cerebro
Visualization of scRNA-seq data.
  • * source/Windows/R-Portable-Win/library/graph/DESCRIPTION

Size: 2.99 GB - Last synced: 3 months ago - Pushed: over 1 year ago

xia-lab/MetaboAnalystR
R package for MetaboAnalyst
  • * DESCRIPTION

Size: 77.4 MB - Last synced: about 9 hours ago - Pushed: about 11 hours ago

bioconductor/MIGSA
  • * DESCRIPTION

Size: 1.64 MB - Last synced: about 1 year ago

jianhong/ChIPpeakAnno
  • * DESCRIPTION

Size: 66 MB - Last synced: 24 days ago - Pushed: 27 days ago

cran/bnClustOmics
:exclamation: This is a read-only mirror of the CRAN R package repository. bnClustOmics — Bayesian Network-Based Clustering of Multi-Omics Data
  • * DESCRIPTION

Size: 169 KB - Last synced: 10 months ago - Pushed: almost 2 years ago

xia-lab/OptiLCMS
R package for optimized LC-MS spectra processing
  • * DESCRIPTION

Size: 12 MB - Last synced: 3 months ago - Pushed: 3 months ago

Bioconductor/Category
Category Analysis
  • * DESCRIPTION

Size: 493 KB - Last synced: 24 days ago - Pushed: about 1 month ago

js229/Vennerable
Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.
  • * DESCRIPTION

Size: 2.55 MB - Last synced: 3 months ago - Pushed: over 3 years ago

cran/pcalg
:exclamation: This is a read-only mirror of the CRAN R package repository. pcalg — Methods for Graphical Models and Causal Inference. Homepage: https://pcalg.r-forge.r-project.org/
  • * DESCRIPTION

Size: 22.1 MB - Last synced: 12 days ago - Pushed: 4 months ago

Bioconductor/OrganismDbi
Software to enable the smooth interfacing of different database packages
  • * DESCRIPTION

Size: 438 KB - Last synced: 24 days ago - Pushed: about 1 month ago

r-pkg-team/r-bioc-graph
r-bioc-graph packaging
  • * DESCRIPTION

Last synced: over 1 year ago

richardkwo/eff2
Efficient least square for total causal effects
  • * DESCRIPTION

Size: 121 KB - Last synced: about 17 hours ago - Pushed: 4 months ago

CFWP/rags2ridges
Get ridge or die trying - 2 cents
  • * DESCRIPTION

Size: 6.2 MB - Last synced: about 1 month ago - Pushed: 8 months ago

cran/D2C
:exclamation: This is a read-only mirror of the CRAN R package repository. D2C — Predicting Causal Direction from Dependency Features
  • * DESCRIPTION

Size: 1.69 MB - Last synced: 10 months ago - Pushed: over 9 years ago

rcastelo/VariantFiltering
Filter genetic variants using different criteria such as inheritance model, conservation, etc.
  • * DESCRIPTION

Size: 6.13 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

cran/gRbase
:exclamation: This is a read-only mirror of the CRAN R package repository. gRbase — A Package for Graphical Modelling in R. Homepage: https://people.math.aau.dk/~sorenh/software/gR/
  • * DESCRIPTION

Size: 17.7 MB - Last synced: 6 months ago - Pushed: 6 months ago

r-forge/nemo
Read-only mirror of "nemo" from r-forge SVN.
  • * pkg/nemo/DESCRIPTION
  • * pkg/nemo/DESCRIPTION

Size: 8.79 MB - Last synced: 10 months ago - Pushed: over 2 years ago

sneumann/CAMERA
This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data
  • * DESCRIPTION

Size: 3.55 MB - Last synced: 2 months ago - Pushed: 2 months ago

dgrtwo/GSEAMA
Gene Set Enrichment Analysis Made Awesome
  • * DESCRIPTION

Size: 458 KB - Last synced: 8 months ago - Pushed: about 6 years ago

Bioconductor/graph
graph: A package to handle graph data structures
  • * DESCRIPTION

Size: 1.35 MB - Last synced: 24 days ago - Pushed: about 1 month ago

RGLab/CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing
  • * DESCRIPTION

Size: 190 MB - Last synced: 15 days ago - Pushed: 5 months ago

seandavi/BiocPkgTools
Computable build reports, package metadata, and download stats from the Bioconductor project
  • * DESCRIPTION

Size: 5.15 MB - Last synced: 10 days ago - Pushed: 10 days ago

hojsgaard/gRbase
  • * DESCRIPTION

Size: 1.73 MB - Last synced: 5 months ago - Pushed: 5 months ago

r-forge/vennerable
Read-only mirror of "vennerable" from r-forge SVN.
  • * pkg/Vennerable/DESCRIPTION

Size: 4.12 MB - Last synced: 8 months ago - Pushed: over 2 years ago

cran/iSubpathwayMiner
The package can implement the graph-based reconstruction and
  • * DESCRIPTION

Size: 8.09 MB - Last synced: 8 months ago - Pushed: about 10 years ago

cran/SubpathwayMiner
A software package for annotation and identification of the KEGG
  • >= 1.18.0 DESCRIPTION

Size: 15.6 MB - Last synced: 8 months ago - Pushed: about 10 years ago

cran/graph
graph: A package to handle graph data structures
  • * DESCRIPTION

Size: 2.72 MB - Last synced: 10 months ago - Pushed: about 10 years ago

cran/GeneNT
Relevance or Dependency network and signaling pathway discovery
  • * DESCRIPTION

Size: 441 KB - Last synced: 10 months ago - Pushed: about 10 years ago

cran/GOSim
Computation of functional similarities between GO terms and gene
  • * DESCRIPTION

Size: 5.47 MB - Last synced: 10 months ago - Pushed: about 10 years ago

cran/gRc
:exclamation: This is a read-only mirror of the CRAN R package repository. gRc — Inference in Graphical Gaussian Models with Edge and Vertex Symmetries. Homepage: https://people.math.aau.dk/~sorenh/software/gR/
  • * DESCRIPTION

Size: 181 KB - Last synced: 2 months ago - Pushed: 2 months ago

cran/iRefR
:exclamation: This is a read-only mirror of the CRAN R package repository. iRefR — iRefIndex Manager. Homepage: http://irefindex.org/wiki/index.php?title=iRefR
  • * DESCRIPTION

Size: 1.09 MB - Last synced: 8 months ago - Pushed: about 10 years ago

cran/gene2pathway
Prediction of KEGG pathway membership for individual genes based
  • * DESCRIPTION

Size: 18.8 MB - Last synced: 10 months ago - Pushed: about 10 years ago

r-forge/geograph
Read-only mirror of "geograph" from r-forge SVN.
  • * pkg/DESCRIPTION

Size: 126 MB - Last synced: 10 months ago - Pushed: over 2 years ago

r-pkg-team/r-bioc-biocviews
  • >= 1.13.5 DESCRIPTION

Last synced: over 1 year ago

WY-Chen/EqVarDAG
Causal Discovery with Equal Variance Assumption
  • * DESCRIPTION

Size: 92.8 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

schollmeyer/oofos
The R package oofos (optimization on fanilies of sets) provides functions for the optimization of linear functions on families of sets (e.g., closure systems, rings of sets and local rings of sets).
  • * DESCRIPTION

Size: 11.1 MB - Last synced: 17 days ago - Pushed: 18 days ago

cran/SID
:exclamation: This is a read-only mirror of the CRAN R package repository. SID — Structural Intervention Distance. Homepage: https://github.com/fkgruber/SID_cran
  • * DESCRIPTION

Size: 117 KB - Last synced: 6 months ago - Pushed: 6 months ago

r-pkg-team/r-bioc-organismdbi
smooth interfacing of different database packages
  • * DESCRIPTION

Last synced: over 1 year ago

cran/rags2ridges
:exclamation: This is a read-only mirror of the CRAN R package repository. rags2ridges — Ridge Estimation of Precision Matrices from High-Dimensional Data. Homepage: https://cfwp.github.io/rags2ridges/, https://github.com/CFWP/rags2ridges
  • * DESCRIPTION

Size: 681 KB - Last synced: 8 months ago - Pushed: 8 months ago

cran/protiq
:exclamation: This is a read-only mirror of the CRAN R package repository. protiq — Protein (identification and) quantification based on peptide<U+000a>evidence
  • * DESCRIPTION

Size: 180 KB - Last synced: 10 months ago - Pushed: about 10 years ago

edith_ross/kimandsimon
  • * DESCRIPTION

Size: 154 KB - Last synced: over 1 year ago

cellnopt/CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
  • * packages/CellNOptR/DESCRIPTION

Size: 17.8 MB - Last synced: 8 months ago - Pushed: over 6 years ago

jsta/dciR
Calculate Directional Connectivity Index without Matlab
  • * DESCRIPTION

Size: 295 KB - Last synced: over 1 year ago - Pushed: almost 8 years ago

gmbecker/VariantTools
  • * DESCRIPTION

Size: 321 KB - Last synced: about 1 year ago - Pushed: about 9 years ago

npetraco/pixelproj
  • >= 1.46.0 DESCRIPTION

Size: 92.8 KB - Last synced: 10 months ago - Pushed: over 1 year ago

r-forge/quacn
Read-only mirror of "quacn" from r-forge SVN.
  • * pkg/DESCRIPTION

Size: 1.48 MB - Last synced: 10 months ago - Pushed: over 2 years ago

r-forge/rnavgraph
Read-only mirror of "rnavgraph" from r-forge SVN.
  • * pkg/rnavgraph/DESCRIPTION

Size: 17.1 MB - Last synced: 10 months ago - Pushed: over 2 years ago

merns/postgwas
postgwas package for R
  • * DESCRIPTION

Size: 5.5 MB - Last synced: 3 months ago - Pushed: almost 10 years ago

cran/DOSim
Disease Analysis toolkit for gene set; Computation of
  • * DESCRIPTION

Size: 7.41 MB - Last synced: 8 months ago - Pushed: about 10 years ago

cran/QuACN
:exclamation: This is a read-only mirror of the CRAN R package repository. QuACN — QuACN: Quantitative Analysis of Complex Networks
  • * DESCRIPTION

Size: 2.76 MB - Last synced: 7 months ago - Pushed: over 9 years ago

picarus/rattlesrc
  • * package/DESCRIPTION

Size: 2.32 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

fbreitwieser/Vennerable
Fork of Vennerable by Jonathan Swinton
  • * DESCRIPTION

Size: 1.89 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

frankkramer-lab/rBiopaxParser
Parses BioPAX files (BioPAX Version 2 and BioPAX Version 3 are supported) and represents them in R. There is quite alot of documentation available for this package. See the reference manual and the vignette for examples! If you have any questions or suggestions... DONT BE SHY! Mail me! See package description for an email address.
  • * DESCRIPTION

Size: 2.68 MB - Last synced: 2 months ago - Pushed: almost 4 years ago

mikelove/alpine
Modeling and correcting fragment sequence bias for RNA-seq
  • * DESCRIPTION

Size: 1.28 MB - Last synced: 19 days ago - Pushed: 19 days ago

mtmorgan/test
  • * DESCRIPTION

Size: 441 KB - Last synced: about 1 year ago - Pushed: over 11 years ago

cran/micd
:exclamation: This is a read-only mirror of the CRAN R package repository. micd — Multiple Imputation in Causal Graph Discovery. Homepage: https://github.com/bips-hb/micd Report bugs for this package: https://github.com/bips-hb/micd/issues
  • * DESCRIPTION

Size: 59.6 KB - Last synced: 10 months ago - Pushed: over 1 year ago

dbottomly/oligoMask
Tools for masking out problematic Affymetrix probes using VCF files and the oligo Bioconductor package
  • * DESCRIPTION

Size: 844 KB - Last synced: 7 months ago - Pushed: over 9 years ago

marconotaro/hemdag
an R package implementing several Hierarchical Ensemble Methods for graphs
  • * DESCRIPTION

Size: 16.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

bips-hb/micd
Multiple Imputation in Causal Graph Discovery
  • * DESCRIPTION

Size: 342 KB - Last synced: 11 days ago - Pushed: over 1 year ago

cran/PerfMeas
:exclamation: This is a read-only mirror of the CRAN R package repository. PerfMeas — Performance Measures for Ranking and Classification Tasks
  • * DESCRIPTION

Size: 520 KB - Last synced: 8 months ago - Pushed: over 1 year ago

cran/SPMS
Sub-Pathway Mining Software
  • * DESCRIPTION

Size: 648 KB - Last synced: 10 months ago - Pushed: about 10 years ago

r-forge/ddepn
Read-only mirror of "ddepn" from r-forge SVN.
  • * branches/ddepn_1.0/DESCRIPTION
  • * branches/ddepn_1.0/DESCRIPTION
  • * branches/ddepn_1.0.1/DESCRIPTION
  • * branches/ddepn_1.0.1/DESCRIPTION
  • * branches/ddepn_1.5.1_with_c_hmm/DESCRIPTION

Size: 14.9 MB - Last synced: 10 months ago - Pushed: over 2 years ago

pshannon-bioc/graph
the bioc graph class, an experiment for github
  • * DESCRIPTION

Size: 1.11 MB - Last synced: about 1 year ago - Pushed: over 11 years ago

joracab/weka
  • * rattle_2.6.22/rattle/DESCRIPTION

Size: 32 MB - Last synced: 10 months ago - Pushed: about 9 years ago

olli0601/Phyloscanner.R.utilities
Utility functions for deep-sequence phylogenetic analyses at the population level with phyloscanner
  • >= 1.55.1 DESCRIPTION

Size: 14.3 MB - Last synced: 10 months ago - Pushed: about 1 year ago

leiming8886/fRNC
  • * DESCRIPTION

Size: 182 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

sakrejda/dodo
An R package to ease the construction of Integral Projection Models (IPM's)
  • * DESCRIPTION

Size: 3.58 MB - Last synced: about 1 year ago - Pushed: over 10 years ago

jayhorton/reece-external
installed packages from external sources that I keep under source control
  • * lib/R/rattle/DESCRIPTION

Size: 11.2 MB - Last synced: 10 months ago - Pushed: almost 13 years ago

satishgaurav/discoverapp_rubiustx
  • * packrat/lib/x86_64-pc-linux-gnu/3.6.3/KEGGgraph/DESCRIPTION

Size: 817 MB - Last synced: over 1 year ago

jpromeror/EventPointer
R package for the identification and statistical analysis of alternative splicing events using junction arrays or RNASeq data
  • * DESCRIPTION

Size: 2.12 MB - Last synced: 5 months ago - Pushed: about 1 year ago

cancer-genomics/trellis
Structural variant classes and methods
  • * DESCRIPTION

Size: 37.4 MB - Last synced: 10 months ago - Pushed: over 1 year ago

fernandoPalluzzi/SEMgraph
Causal Structure Learning and Network Analysis with Structural Equation Modeling.
  • >= 1.68.0 DESCRIPTION

Size: 360 MB - Last synced: 18 days ago - Pushed: about 2 months ago

wata909/SteinerNet Fork of cran/SteinerNet
Steiner Tree Approach for Graph Analysis
  • * DESCRIPTION
  • * DESCRIPTION

Size: 426 KB - Last synced: 12 months ago - Pushed: about 10 years ago

igraph/pcalg Fork of cran/pcalg
Methods for graphical models and causal inference
  • * DESCRIPTION

Size: 13.6 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago

CMPG/signet
An R package to detect selection in biological pathways
  • * DESCRIPTION

Size: 82.3 MB - Last synced: 2 months ago - Pushed: 4 months ago

visze/HEMDAG-1
HEMDAG — Hierarchical Ensemble Methods for Directed Acyclic Graphs
  • * HEMDAG/DESCRIPTION

Size: 1.4 MB - Last synced: over 1 year ago - Pushed: almost 6 years ago

visze/HEMDAG
  • * DESCRIPTION

Size: 1.4 MB - Last synced: over 1 year ago - Pushed: almost 6 years ago

wanglu2014/QuACN Fork of cran/QuACN
:exclamation: This is a read-only mirror of the CRAN R package repository. QuACN — QuACN: Quantitative Analysis of Complex Networks
  • * DESCRIPTION

Size: 2.76 MB - Last synced: over 1 year ago - Pushed: over 9 years ago

saezlab/CellNOptR-MaBoSS
CellNOptR with MaBoSS simulation
  • * DESCRIPTION

Size: 1.63 MB - Last synced: 16 days ago - Pushed: over 4 years ago

andresrabinovich/heuristica_expresion_go
Método de métrica mixta iterativo para combinar expresión y go
  • * test_de_sobrerepresentacion/Category/DESCRIPTION
  • * test_de_sobrerepresentacion/GOstats/DESCRIPTION

Size: 59.9 MB - Last synced: over 1 year ago - Pushed: over 7 years ago

Shicheng-Guo/crmSubpathway
Identifying cancer-related metabolic subpathways
  • * crmSubpathway/DESCRIPTION

Size: 1.44 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

cran/archeofrag
:exclamation: This is a read-only mirror of the CRAN R package repository. archeofrag — Refitting and Spatial Analysis in Archaeology. Homepage: https://github.com/sebastien-plutniak/archeofrag Report bugs for this package: https://github.com/sebastien-plutniak/archeofrag/issues
  • * DESCRIPTION

Size: 319 KB - Last synced: 10 months ago - Pushed: over 1 year ago