Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: cran: RBGL
View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RBGL
Dependent Repos 89
Bioconductor/biocViews
Categorized views of R package repositories- >= 1.13.5 DESCRIPTION
Size: 1.47 MB - Last synced: 24 days ago - Pushed: about 1 month ago
EvolEcolGroup/geograph
Interfacing GIS layers and spatial graphs- * DESCRIPTION
Size: 98.9 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
cran/RSeed
:exclamation: This is a read-only mirror of the CRAN R package repository. RSeed — Borenstein Analysis- * DESCRIPTION
Size: 8.79 KB - Last synced: 8 months ago - Pushed: over 7 years ago
bhklab/predictionet
This package contains a set of functions related to network inference combining genomic data and prior information extracted from biomedical literature and structured biological databases.The main function is able to generate networks using bayesian or regression-based inference methods; while the former is limited to < 100 of variables, the latter may infer network with hundreds of variables. Several statistics at the edge and node levels have been implemented (edge stability, predictive ability of each node, ...) in order to help the user to focus on high quality subnetworks. Ultimately, this package is used in the 'Predictive Networks' web application developed by the Dana-Farber Cancer Institute in collaboration with Entagen- * DESCRIPTION
Size: 5.27 MB - Last synced: about 2 months ago - Pushed: over 11 years ago
cbg-ethz/SGS
Inference in Bayesian Networks with R- * DESCRIPTION
Size: 5.21 MB - Last synced: 2 months ago - Pushed: over 1 year ago
Accio/KEGGgraph
The KEGGgraph package to parse KEGG pathways in R into graph objects- * DESCRIPTION
Size: 3.33 MB - Last synced: 4 days ago - Pushed: 9 months ago
cran/BiDAG
:exclamation: This is a read-only mirror of the CRAN R package repository. BiDAG — Bayesian Inference for Directed Acyclic Graphs- * DESCRIPTION
Size: 1.51 MB - Last synced: 8 months ago - Pushed: about 1 year ago
RGLab/flowWorkspace
flowWorkspace- * DESCRIPTION
Size: 26.6 MB - Last synced: 3 months ago - Pushed: 3 months ago
RGLab/flowStats
flowStats: algorithms for flow cytometry data analysis using BioConductor tools- * DESCRIPTION
Size: 4.16 MB - Last synced: 23 days ago - Pushed: 11 months ago
RGLab/openCyto
A package that provides data analysis pipeline for flow cytometry.- * DESCRIPTION
Size: 17.2 MB - Last synced: 18 days ago - Pushed: 18 days ago
saezlab/CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.- * DESCRIPTION
Size: 18.2 MB - Last synced: 16 days ago - Pushed: about 2 months ago
romanhaa/Cerebro
Visualization of scRNA-seq data.- * source/Windows/R-Portable-Win/library/graph/DESCRIPTION
Size: 2.99 GB - Last synced: 3 months ago - Pushed: over 1 year ago
xia-lab/MetaboAnalystR
R package for MetaboAnalyst- * DESCRIPTION
Size: 77.4 MB - Last synced: about 9 hours ago - Pushed: about 11 hours ago
cran/bnClustOmics
:exclamation: This is a read-only mirror of the CRAN R package repository. bnClustOmics — Bayesian Network-Based Clustering of Multi-Omics Data- * DESCRIPTION
Size: 169 KB - Last synced: 10 months ago - Pushed: almost 2 years ago
xia-lab/OptiLCMS
R package for optimized LC-MS spectra processing- * DESCRIPTION
Size: 12 MB - Last synced: 3 months ago - Pushed: 3 months ago
Bioconductor/Category
Category Analysis- * DESCRIPTION
Size: 493 KB - Last synced: 24 days ago - Pushed: about 1 month ago
js229/Vennerable
Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.- * DESCRIPTION
Size: 2.55 MB - Last synced: 3 months ago - Pushed: over 3 years ago
cran/pcalg
:exclamation: This is a read-only mirror of the CRAN R package repository. pcalg — Methods for Graphical Models and Causal Inference. Homepage: https://pcalg.r-forge.r-project.org/- * DESCRIPTION
Size: 22.1 MB - Last synced: 12 days ago - Pushed: 4 months ago
Bioconductor/OrganismDbi
Software to enable the smooth interfacing of different database packages- * DESCRIPTION
Size: 438 KB - Last synced: 24 days ago - Pushed: about 1 month ago
richardkwo/eff2
Efficient least square for total causal effects- * DESCRIPTION
Size: 121 KB - Last synced: about 17 hours ago - Pushed: 4 months ago
CFWP/rags2ridges
Get ridge or die trying - 2 cents- * DESCRIPTION
Size: 6.2 MB - Last synced: about 1 month ago - Pushed: 8 months ago
cran/D2C
:exclamation: This is a read-only mirror of the CRAN R package repository. D2C — Predicting Causal Direction from Dependency Features- * DESCRIPTION
Size: 1.69 MB - Last synced: 10 months ago - Pushed: over 9 years ago
rcastelo/VariantFiltering
Filter genetic variants using different criteria such as inheritance model, conservation, etc.- * DESCRIPTION
Size: 6.13 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
cran/gRbase
:exclamation: This is a read-only mirror of the CRAN R package repository. gRbase — A Package for Graphical Modelling in R. Homepage: https://people.math.aau.dk/~sorenh/software/gR/- * DESCRIPTION
Size: 17.7 MB - Last synced: 6 months ago - Pushed: 6 months ago
r-forge/nemo
Read-only mirror of "nemo" from r-forge SVN.- * pkg/nemo/DESCRIPTION
- * pkg/nemo/DESCRIPTION
Size: 8.79 MB - Last synced: 10 months ago - Pushed: over 2 years ago
sneumann/CAMERA
This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data- * DESCRIPTION
Size: 3.55 MB - Last synced: 2 months ago - Pushed: 2 months ago
dgrtwo/GSEAMA
Gene Set Enrichment Analysis Made Awesome- * DESCRIPTION
Size: 458 KB - Last synced: 8 months ago - Pushed: about 6 years ago
Bioconductor/graph
graph: A package to handle graph data structures- * DESCRIPTION
Size: 1.35 MB - Last synced: 24 days ago - Pushed: about 1 month ago
RGLab/CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing- * DESCRIPTION
Size: 190 MB - Last synced: 15 days ago - Pushed: 5 months ago
seandavi/BiocPkgTools
Computable build reports, package metadata, and download stats from the Bioconductor project- * DESCRIPTION
Size: 5.15 MB - Last synced: 10 days ago - Pushed: 10 days ago
r-forge/vennerable
Read-only mirror of "vennerable" from r-forge SVN.- * pkg/Vennerable/DESCRIPTION
Size: 4.12 MB - Last synced: 8 months ago - Pushed: over 2 years ago
cran/iSubpathwayMiner
The package can implement the graph-based reconstruction and- * DESCRIPTION
Size: 8.09 MB - Last synced: 8 months ago - Pushed: about 10 years ago
cran/SubpathwayMiner
A software package for annotation and identification of the KEGG- >= 1.18.0 DESCRIPTION
Size: 15.6 MB - Last synced: 8 months ago - Pushed: about 10 years ago
cran/graph
graph: A package to handle graph data structures- * DESCRIPTION
Size: 2.72 MB - Last synced: 10 months ago - Pushed: about 10 years ago
cran/GeneNT
Relevance or Dependency network and signaling pathway discovery- * DESCRIPTION
Size: 441 KB - Last synced: 10 months ago - Pushed: about 10 years ago
cran/GOSim
Computation of functional similarities between GO terms and gene- * DESCRIPTION
Size: 5.47 MB - Last synced: 10 months ago - Pushed: about 10 years ago
cran/gRc
:exclamation: This is a read-only mirror of the CRAN R package repository. gRc — Inference in Graphical Gaussian Models with Edge and Vertex Symmetries. Homepage: https://people.math.aau.dk/~sorenh/software/gR/- * DESCRIPTION
Size: 181 KB - Last synced: 2 months ago - Pushed: 2 months ago
cran/iRefR
:exclamation: This is a read-only mirror of the CRAN R package repository. iRefR — iRefIndex Manager. Homepage: http://irefindex.org/wiki/index.php?title=iRefR- * DESCRIPTION
Size: 1.09 MB - Last synced: 8 months ago - Pushed: about 10 years ago
cran/gene2pathway
Prediction of KEGG pathway membership for individual genes based- * DESCRIPTION
Size: 18.8 MB - Last synced: 10 months ago - Pushed: about 10 years ago
r-forge/geograph
Read-only mirror of "geograph" from r-forge SVN.- * pkg/DESCRIPTION
Size: 126 MB - Last synced: 10 months ago - Pushed: over 2 years ago
WY-Chen/EqVarDAG
Causal Discovery with Equal Variance Assumption- * DESCRIPTION
Size: 92.8 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
schollmeyer/oofos
The R package oofos (optimization on fanilies of sets) provides functions for the optimization of linear functions on families of sets (e.g., closure systems, rings of sets and local rings of sets).- * DESCRIPTION
Size: 11.1 MB - Last synced: 17 days ago - Pushed: 18 days ago
cran/SID
:exclamation: This is a read-only mirror of the CRAN R package repository. SID — Structural Intervention Distance. Homepage: https://github.com/fkgruber/SID_cran- * DESCRIPTION
Size: 117 KB - Last synced: 6 months ago - Pushed: 6 months ago
r-pkg-team/r-bioc-organismdbi
smooth interfacing of different database packages- * DESCRIPTION
Last synced: over 1 year ago
cran/rags2ridges
:exclamation: This is a read-only mirror of the CRAN R package repository. rags2ridges — Ridge Estimation of Precision Matrices from High-Dimensional Data. Homepage: https://cfwp.github.io/rags2ridges/, https://github.com/CFWP/rags2ridges- * DESCRIPTION
Size: 681 KB - Last synced: 8 months ago - Pushed: 8 months ago
cran/protiq
:exclamation: This is a read-only mirror of the CRAN R package repository. protiq — Protein (identification and) quantification based on peptide<U+000a>evidence- * DESCRIPTION
Size: 180 KB - Last synced: 10 months ago - Pushed: about 10 years ago
cellnopt/CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.- * packages/CellNOptR/DESCRIPTION
Size: 17.8 MB - Last synced: 8 months ago - Pushed: over 6 years ago
jsta/dciR
Calculate Directional Connectivity Index without Matlab- * DESCRIPTION
Size: 295 KB - Last synced: over 1 year ago - Pushed: almost 8 years ago
gmbecker/VariantTools
- * DESCRIPTION
Size: 321 KB - Last synced: about 1 year ago - Pushed: about 9 years ago
npetraco/pixelproj
- >= 1.46.0 DESCRIPTION
Size: 92.8 KB - Last synced: 10 months ago - Pushed: over 1 year ago
r-forge/quacn
Read-only mirror of "quacn" from r-forge SVN.- * pkg/DESCRIPTION
Size: 1.48 MB - Last synced: 10 months ago - Pushed: over 2 years ago
r-forge/rnavgraph
Read-only mirror of "rnavgraph" from r-forge SVN.- * pkg/rnavgraph/DESCRIPTION
Size: 17.1 MB - Last synced: 10 months ago - Pushed: over 2 years ago
merns/postgwas
postgwas package for R- * DESCRIPTION
Size: 5.5 MB - Last synced: 3 months ago - Pushed: almost 10 years ago
cran/DOSim
Disease Analysis toolkit for gene set; Computation of- * DESCRIPTION
Size: 7.41 MB - Last synced: 8 months ago - Pushed: about 10 years ago
cran/QuACN
:exclamation: This is a read-only mirror of the CRAN R package repository. QuACN — QuACN: Quantitative Analysis of Complex Networks- * DESCRIPTION
Size: 2.76 MB - Last synced: 7 months ago - Pushed: over 9 years ago
picarus/rattlesrc
- * package/DESCRIPTION
Size: 2.32 MB - Last synced: about 1 year ago - Pushed: over 8 years ago
fbreitwieser/Vennerable
Fork of Vennerable by Jonathan Swinton- * DESCRIPTION
Size: 1.89 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago
frankkramer-lab/rBiopaxParser
Parses BioPAX files (BioPAX Version 2 and BioPAX Version 3 are supported) and represents them in R. There is quite alot of documentation available for this package. See the reference manual and the vignette for examples! If you have any questions or suggestions... DONT BE SHY! Mail me! See package description for an email address.- * DESCRIPTION
Size: 2.68 MB - Last synced: 2 months ago - Pushed: almost 4 years ago
mikelove/alpine
Modeling and correcting fragment sequence bias for RNA-seq- * DESCRIPTION
Size: 1.28 MB - Last synced: 19 days ago - Pushed: 19 days ago
mtmorgan/test
- * DESCRIPTION
Size: 441 KB - Last synced: about 1 year ago - Pushed: over 11 years ago
cran/micd
:exclamation: This is a read-only mirror of the CRAN R package repository. micd — Multiple Imputation in Causal Graph Discovery. Homepage: https://github.com/bips-hb/micd Report bugs for this package: https://github.com/bips-hb/micd/issues- * DESCRIPTION
Size: 59.6 KB - Last synced: 10 months ago - Pushed: over 1 year ago
dbottomly/oligoMask
Tools for masking out problematic Affymetrix probes using VCF files and the oligo Bioconductor package- * DESCRIPTION
Size: 844 KB - Last synced: 7 months ago - Pushed: over 9 years ago
marconotaro/hemdag
an R package implementing several Hierarchical Ensemble Methods for graphs- * DESCRIPTION
Size: 16.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
bips-hb/micd
Multiple Imputation in Causal Graph Discovery- * DESCRIPTION
Size: 342 KB - Last synced: 11 days ago - Pushed: over 1 year ago
cran/PerfMeas
:exclamation: This is a read-only mirror of the CRAN R package repository. PerfMeas — Performance Measures for Ranking and Classification Tasks- * DESCRIPTION
Size: 520 KB - Last synced: 8 months ago - Pushed: over 1 year ago
cran/SPMS
Sub-Pathway Mining Software- * DESCRIPTION
Size: 648 KB - Last synced: 10 months ago - Pushed: about 10 years ago
r-forge/ddepn
Read-only mirror of "ddepn" from r-forge SVN.- * branches/ddepn_1.0/DESCRIPTION
- * branches/ddepn_1.0/DESCRIPTION
- * branches/ddepn_1.0.1/DESCRIPTION
- * branches/ddepn_1.0.1/DESCRIPTION
- * branches/ddepn_1.5.1_with_c_hmm/DESCRIPTION
Size: 14.9 MB - Last synced: 10 months ago - Pushed: over 2 years ago
pshannon-bioc/graph
the bioc graph class, an experiment for github- * DESCRIPTION
Size: 1.11 MB - Last synced: about 1 year ago - Pushed: over 11 years ago
joracab/weka
- * rattle_2.6.22/rattle/DESCRIPTION
Size: 32 MB - Last synced: 10 months ago - Pushed: about 9 years ago
olli0601/Phyloscanner.R.utilities
Utility functions for deep-sequence phylogenetic analyses at the population level with phyloscanner- >= 1.55.1 DESCRIPTION
Size: 14.3 MB - Last synced: 10 months ago - Pushed: about 1 year ago
leiming8886/fRNC
- * DESCRIPTION
Size: 182 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
sakrejda/dodo
An R package to ease the construction of Integral Projection Models (IPM's)- * DESCRIPTION
Size: 3.58 MB - Last synced: about 1 year ago - Pushed: over 10 years ago
jayhorton/reece-external
installed packages from external sources that I keep under source control- * lib/R/rattle/DESCRIPTION
Size: 11.2 MB - Last synced: 10 months ago - Pushed: almost 13 years ago
satishgaurav/discoverapp_rubiustx
- * packrat/lib/x86_64-pc-linux-gnu/3.6.3/KEGGgraph/DESCRIPTION
Size: 817 MB - Last synced: over 1 year ago
jpromeror/EventPointer
R package for the identification and statistical analysis of alternative splicing events using junction arrays or RNASeq data- * DESCRIPTION
Size: 2.12 MB - Last synced: 5 months ago - Pushed: about 1 year ago
cancer-genomics/trellis
Structural variant classes and methods- * DESCRIPTION
Size: 37.4 MB - Last synced: 10 months ago - Pushed: over 1 year ago
fernandoPalluzzi/SEMgraph
Causal Structure Learning and Network Analysis with Structural Equation Modeling.- >= 1.68.0 DESCRIPTION
Size: 360 MB - Last synced: 18 days ago - Pushed: about 2 months ago
wata909/SteinerNet Fork of cran/SteinerNet
Steiner Tree Approach for Graph Analysis- * DESCRIPTION
- * DESCRIPTION
Size: 426 KB - Last synced: 12 months ago - Pushed: about 10 years ago
igraph/pcalg Fork of cran/pcalg
Methods for graphical models and causal inference- * DESCRIPTION
Size: 13.6 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago
CMPG/signet
An R package to detect selection in biological pathways- * DESCRIPTION
Size: 82.3 MB - Last synced: 2 months ago - Pushed: 4 months ago
visze/HEMDAG-1
HEMDAG — Hierarchical Ensemble Methods for Directed Acyclic Graphs- * HEMDAG/DESCRIPTION
Size: 1.4 MB - Last synced: over 1 year ago - Pushed: almost 6 years ago
wanglu2014/QuACN Fork of cran/QuACN
:exclamation: This is a read-only mirror of the CRAN R package repository. QuACN — QuACN: Quantitative Analysis of Complex Networks- * DESCRIPTION
Size: 2.76 MB - Last synced: over 1 year ago - Pushed: over 9 years ago
saezlab/CellNOptR-MaBoSS
CellNOptR with MaBoSS simulation- * DESCRIPTION
Size: 1.63 MB - Last synced: 16 days ago - Pushed: over 4 years ago
andresrabinovich/heuristica_expresion_go
Método de métrica mixta iterativo para combinar expresión y go- * test_de_sobrerepresentacion/Category/DESCRIPTION
- * test_de_sobrerepresentacion/GOstats/DESCRIPTION
Size: 59.9 MB - Last synced: over 1 year ago - Pushed: over 7 years ago
Shicheng-Guo/crmSubpathway
Identifying cancer-related metabolic subpathways- * crmSubpathway/DESCRIPTION
Size: 1.44 MB - Last synced: 10 months ago - Pushed: almost 4 years ago
cran/archeofrag
:exclamation: This is a read-only mirror of the CRAN R package repository. archeofrag — Refitting and Spatial Analysis in Archaeology. Homepage: https://github.com/sebastien-plutniak/archeofrag Report bugs for this package: https://github.com/sebastien-plutniak/archeofrag/issues- * DESCRIPTION
Size: 319 KB - Last synced: 10 months ago - Pushed: over 1 year ago