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GitHub / seek4science / seek
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seek4science%2Fseek
Stars: 73
Forks: 50
Open Issues: 394
License: bsd-3-clause
Language: Ruby
Repo Size: 381 MB
Dependencies:
522
Created: almost 10 years ago
Updated: 3 days ago
Last pushed: 5 days ago
Last synced: 4 days ago
Topics: biohackcovid20, data, datamanagement, fair, isa, opendata, publication, science, semantic-web, synthetic-biology, systems-biology
Files
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Readme
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Dependencies
- actions/checkout v2 composite
.github/workflows/tests.yml
actions
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/setup-java v3 composite
- actions/setup-python v4 composite
- ruby/setup-ruby v1 composite
- mysql 5.7 docker
- postgres 11 docker
- tenforce/virtuoso * docker
Dockerfile
docker
- ruby 2.7-buster build
- fairdom/seek 1.13
- fairdom/seek-solr 8.11
- mysql 5.7
docker-compose-virtuoso.yml
docker
- fairdom/seek 1.13
- fairdom/seek-solr 8.11
- mysql 5.7
- tenforce/virtuoso latest
- eeacms/postfix latest
- fairdom/seek 1.13
- fairdom/seek-solr 8.11
- mysql 5.7
docker-compose.yml
docker
- fairdom/seek 1.13
- fairdom/seek-solr 8.11
- mysql 5.7
- ibisba/knime-workflow-base 3.6.2-1 build
- conda/miniconda3 latest build
- scratch latest build
requirements.txt
pypi
Gemfile
rubygems
- better_errors >= 0 development
- binding_of_caller >= 0 development
- database_cleaner ~> 1.7.0 development
- gem-licenses >= 0 development
- listen ~> 3.3 development
- magic_lamp >= 0 development
- minitest ~> 5.14 development
- minitest-reporters >= 0 development
- pry >= 0 development
- pry-doc >= 0 development
- pry-remote >= 0 development
- rack-mini-profiler ~> 2.0 development
- rails-controller-testing >= 0 development
- rails-perftest >= 0 development
- rails_best_practices >= 0 development
- request-log-analyzer >= 0 development
- rubocop >= 0 development
- ruby-prof >= 0 development
- simplecov >= 0 development
- sunspot_matchers >= 0 development
- teaspoon >= 0 development
- teaspoon-mocha >= 0 development
- test-prof >= 0 development
- vcr ~> 2.9 development
- web-console >= 4.1.0 development
- webdrivers >= 0 development
- webmock >= 0 development
- whenever-test >= 0 development
- RedCloth >= 4.3.0
- active_model_serializers ~> 0.10.13
- activerecord-import >= 0
- activerecord-session_store >= 0
- acts-as-taggable-on >= 0
- acts_as_list >= 0
- acts_as_tree >= 0
- addressable >= 0
- api_smith >= 0
- attr_encrypted ~> 3.0.0
- auto_strip_attributes >= 0
- bibtex-ruby ~> 5.1.0
- bio ~> 1.5.1
- bioportal >= 3.0
- bives ~> 2.0
- bootsnap >= 1.4.4
- bootstrap-sass >= 3.4.1
- bundler >= 1.8.4
- cff ~> 0.9.0
- citeproc-ruby ~> 2.0.0
- coffee-rails ~> 4.2
- commonmarker >= 0
- country_select >= 0
- csl-styles ~> 2.0.0
- daemons = 1.1.9
- delayed_job_active_record >= 0
- docsplit >= 0
- doi_query_tool >= 0
- doorkeeper >= 5.2.5
- dotenv-rails ~> 2.7.6
- equivalent-xml >= 0
- exception_notification >= 0
- factory_girl = 2.6.4
- feedjira ~> 1
- fleximage >= 0
- fssm >= 0
- gitlab_omniauth-ldap ~> 2.2.0
- google-analytics-rails >= 0
- handlebars_assets >= 0
- hpricot ~> 0.8.2
- i18n-js >= 0
- indefinite_article >= 0
- jbuilder ~> 2.7
- jbuilder-json_api >= 0
- jquery-rails ~> 4.2.2
- jquery-ui-rails >= 0
- json-schema >= 0
- libreconv >= 0
- libxml-ruby ~> 2.9.0
- linkeddata ~> 3.2.0
- lograge >= 0
- loofah >= 0
- mechanize >= 0
- metainspector >= 0
- mimemagic ~> 0.3.7
- my_responds_to_parent >= 0
- mysql2 >= 0
- nokogiri ~> 1.13.10
- omniauth ~> 2.1.0
- omniauth-github >= 0
- omniauth-rails_csrf_protection >= 0
- omniauth_openid_connect >= 0
- open4 >= 0
- openid_connect = 1.3.0
- openseek-api >= 0
- passenger >= 0
- pg >= 0
- pothoven-attachment_fu >= 0
- private_address_check >= 0
- progress_bar >= 0
- psych >= 0
- puma ~> 5.6
- rack-attack ~> 6.6.0
- rack-cors >= 0
- rails ~> 6.1.7
- rails-html-sanitizer >= 0
- rails-observers >= 0
- rails-static-router >= 0
- rails_autolink >= 0
- ransack >= 0
- rdf-virtuoso >= 0.2.0
- rdoc >= 0
- recaptcha ~> 4.1.0
- remotipart ~> 1.4.4
- request_store >= 0
- responders >= 0
- rest-client ~> 2.0
- rfc-822 >= 0
- rmagick = 2.15.2
- ro-bundle ~> 0.3.0
- ro-crate ~> 0.5.1
- rspec-rails ~> 5.1
- rubyzip >= 0
- rugged >= 0
- sample-template-generator ~> 0.5
- sass-rails >= 6
- savon = 1.1.0
- seedbank >= 0
- simple-spreadsheet-extractor ~> 0.17.0
- sprockets-rails >= 0
- sqlite3 ~> 1.4
- stringio = 0.1.0
- sunspot_rails >= 0
- terrapin >= 0
- terser ~> 1.1, >= 1.1.1
- unicorn-rails >= 0
- uuid ~> 2.3
- validate_url >= 0
- whenever ~> 1.0.0
- will_paginate ~> 3.1
- yaml_db >= 0
- zenodo-client >= 0
- actions/checkout v3 composite
- technote-space/workflow-conclusion-action v3.0.3 composite
- mysql 8.0.21 docker
Gemfile.lock
rubygems