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GitHub / segrelab / MiCoNE
The Microbial Co-occurrence Network Explorer
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/segrelab%2FMiCoNE
Stars: 18
Forks: 4
Open Issues: 1
License: mit
Language: Python
Repo Size: 75.1 MB
Dependencies:
132
Created: almost 6 years ago
Updated: 4 months ago
Last pushed: 8 months ago
Last synced: about 2 months ago
Commit Stats
Commits: 1480
Authors: 3
Mean commits per author: 493.33
Development Distribution Score: 0.001
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/segrelab/MiCoNE
Topics: 16s-rrna, data-analysis, microbiome, network-analysis, nextflow, pipeline
Files
Dependencies
- coverage ^5.3.1 develop
- flake8 ^3.8.4 develop
- ipython ^7.19.0 develop
- mypy ^0.790 develop
- pre-commit ^2.9.3 develop
- pylint ^2.6.0 develop
- pytest ^6.2.1 develop
- pytest-cov ^2.11.0 develop
- Jinja2 ^2.11.2
- Sphinx ^3.4.2
- biom-format ^2.1.10
- black ^21.12b0
- click ^7.1.2
- ete3 ^3.1.2
- h5py ^3.1.0
- halo ^0.0.31
- jinja2schema ^0.1.4
- loguru ^0.5.3
- matplotlib ^3.3.3
- networkx ^2.5
- numpy ^1.19.4
- pandas ^1.2.0
- python >=3.8,<3.11
- schematics ^2.1.0
- simplejson ^3.17.2
- sphinx-rtd-theme ^0.5.1
- statsmodels 0.13.2
- toml ^0.10.2
- actions/checkout v2 composite
- actions/setup-python v2 composite
- codecov/codecov-action v1 composite