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GitHub / shnizzedy / C-PAC

Configurable Pipeline for the Analysis of Connectomes

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/shnizzedy%2FC-PAC

Fork of FCP-INDI/C-PAC
Stars: 1
Forks: 0
Open Issues: 1

License: lgpl-3.0
Language: Python
Repo Size: 280 MB
Dependencies: 144

Created: almost 4 years ago
Updated: about 1 month ago
Last pushed: about 1 month ago
Last synced: about 1 month ago

Files

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Readme

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Dependencies

.github/workflows/build_C-PAC.yml actions

actions/checkout v2 composite
docker/build-push-action v2.9.0 composite
docker/login-action v1 composite
docker/setup-buildx-action v1.6.0 composite
easimon/maximize-build-space v4 composite

.github/workflows/build_and_test.yml actions

actions/checkout v2 composite

.github/workflows/build_stages.yml actions

actions/checkout v2 composite
docker/build-push-action v2.9.0 composite
docker/login-action v1 composite
docker/setup-buildx-action v1.6.0 composite
easimon/maximize-build-space v4 composite
tj-actions/changed-files v17.2 composite

.github/workflows/delete_images.yml actions

actions/checkout v2 composite

Dockerfile docker

ghcr.io/fcp-indi/c-pac/stage-base standard-v1.8.4.dev build

.github/stage_requirements/ABCD-HCP.txt pypi

.github/stage_requirements/fMRIPrep-LTS.txt pypi

.github/stage_requirements/standard.txt pypi

dev/circleci_data/requirements.txt pypi

GitPython * development
coverage * development
pytest * development
pytest-timeout * development
pytest_bdd * development
pytest_click * development
pyyaml * development
spython >=0.0.81 development
yamlordereddictloader * development

dev/docker_data/required_afni_pkgs.txt pypi

linux_openmp_64 * development

requirements.txt pypi

INDI-Tools *
PyBASC ==0.4.5
PyPEER *
boto3 ==1.7.37
click ==6.7
configparser ==3.7.4
future ==0.16.0
lockfile ==0.12.2
matplotlib ==3.1.3
networkx ==2.4
nibabel ==2.3.3
nilearn ==0.4.1
nipype ==1.5.1
nose ==1.3.7
numpy ==1.21.0
pandas ==0.23.4
patsy ==0.5.0
prov ==1.5.2
psutil ==5.6.6
python-dateutil ==2.7.3
pyyaml ==5.4
requests ==2.21.0
scikit-learn ==0.22.1
scipy ==1.4.1
simplejson ==3.15.0
traits ==4.6.0
voluptuous >=0.12.0
yamlordereddictloader ==0.4.0

.github/workflows/deploy_to_Docker_Hub.yml actions

docker/login-action v2 composite

.github/workflows/on_push.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
tj-actions/changed-files v35.7.6 composite

.github/workflows/regression_test_full.yml actions

actions/checkout v2 composite
actions/upload-artifact v3 composite

.github/workflows/regression_test_lite.yml actions

appleboy/ssh-action v1.0.0 composite
guibranco/github-status-action-v2 v1.1.7 composite

.github/workflows/smoke_test_participant.yml actions

actions/upload-artifact v3 composite

.github/stage_requirements/lite.txt pypi

.github/stage_requirements/phase_one.txt pypi

.github/stage_requirements/phase_three.txt pypi

.github/stage_requirements/phase_two.txt pypi

dev/docker_data/required_freesurfer_pkgs.txt pypi

dev/docker_data/unpinned_requirements.txt pypi

setup.py pypi