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GitHub / snek5000 / snek5000

:snake: Python framework for Nek5000 :rocket:

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/snek5000%2Fsnek5000

Stars: 22
Forks: 9
Open Issues: 20

License: bsd-3-clause
Language: Python
Repo Size: 1.82 MB
Dependencies: 577

Created: about 4 years ago
Updated: about 2 months ago
Last pushed: 26 days ago
Last synced: 26 days ago

Commit Stats

Commits: 962
Authors: 15
Mean commits per author: 64.13
Development Distribution Score: 0.699
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/snek5000/snek5000

Topics: cfd, closember, fluiddyn, fluidsim, jinja2, nek5000, python, simulation, snakemake, snek5000, workflow

Funding links: https://liberapay.com/ashwinvis, https://ko-fi.com/ashwinvis, https://fluid.quest/pages/sponsors.html

Files

Readme

Dependencies

requirements/environment.yaml pypi

pyproject.toml pypi

requirements/vcs_packages.in pypi

requirements/docs.txt pypi

alabaster ==0.7.12
anyio ==3.6.2
appdirs ==1.4.4
argon2-cffi ==21.3.0
argon2-cffi-bindings ==21.2.0
asttokens ==2.2.1
attrs ==22.1.0
babel ==2.11.0
backcall ==0.2.0
beautifulsoup4 ==4.11.1
bleach ==5.0.1
breathe ==4.34.0
certifi ==2022.9.24
cffi ==1.15.1
charset-normalizer ==2.1.1
click ==8.1.3
colorama ==0.4.6
configargparse ==1.5.3
connection-pool ==0.0.3
contourpy ==1.0.6
cycler ==0.11.0
datrie ==0.8.2
debugpy ==1.6.4
decorator ==5.1.1
defusedxml ==0.7.1
distro ==1.8.0
docutils ==0.17.1
dpath ==2.1.2
entrypoints ==0.4
executing ==1.2.0
fastjsonschema ==2.16.2
filelock ==3.8.1
fluiddyn ==0.5.1
fluidsim-core ==0.7.2
fonttools ==4.38.0
furo ==2022.9.29
gitdb ==4.0.10
gitpython ==3.1.30
greenlet ==2.0.1
h5netcdf ==1.1.0
h5py ==3.7.0
idna ==3.4
imagesize ==1.4.1
importlib-metadata ==5.1.0
inflection ==0.5.1
ipykernel ==6.17.1
ipython ==8.7.0
jedi ==0.18.2
jinja2 ==3.1.2
jsonschema ==4.17.3
jupyter-cache ==0.5.0
jupyter-client ==7.4.7
jupyter-core ==5.1.0
jupyter-server ==1.23.3
jupyter-server-mathjax ==0.2.6
jupyterlab-pygments ==0.2.2
kiwisolver ==1.4.4
linkify-it-py ==2.0.0
livereload ==2.6.3
markdown-it-py ==2.1.0
markupsafe ==2.1.1
matplotlib ==3.6.2
matplotlib-inline ==0.1.6
mdit-py-plugins ==0.3.1
mdurl ==0.1.2
mistune ==2.0.4
myst-nb ==0.17.1
myst-parser ==0.18.1
nbclient ==0.5.13
nbconvert ==7.2.5
nbdime ==3.1.1
nbformat ==5.7.0
nest-asyncio ==1.5.6
numpy ==1.23.5
packaging ==21.3
pandas ==1.5.2
pandocfilters ==1.5.0
parso ==0.8.3
pexpect ==4.8.0
pickleshare ==0.7.5
pillow ==9.3.0
plac ==1.3.5
platformdirs ==2.5.4
prometheus-client ==0.15.0
prompt-toolkit ==3.0.33
psutil ==5.9.4
ptyprocess ==0.7.0
pulp ==2.7.0
pure-eval ==0.2.2
pycparser ==2.21
pygments ==2.13.0
pymech ==1.5.0
pyparsing ==3.0.9
pyrsistent ==0.19.2
python-dateutil ==2.8.2
pytz ==2022.6
pyyaml ==6.0
pyzmq ==24.0.1
qtpy ==2.3.0
requests ==2.28.1
reretry ==0.11.1
scipy ==1.9.3
send2trash ==1.8.0
setuptools-scm ==7.0.5
six ==1.16.0
smart-open ==6.2.0
smmap ==5.0.0
snakemake ==7.18.2
sniffio ==1.3.0
snowballstemmer ==2.2.0
soupsieve ==2.3.2.post1
sphinx ==5.3.0
sphinx-autobuild ==2021.3.14
sphinx-basic-ng ==1.0.0b1
sphinx-copybutton ==0.5.1
sphinx-inline-tabs ==2022.1.2b11
sphinxcontrib-applehelp ==1.0.2
sphinxcontrib-devhelp ==1.0.2
sphinxcontrib-htmlhelp ==2.0.0
sphinxcontrib-jsmath ==1.0.1
sphinxcontrib-qthelp ==1.0.3
sphinxcontrib-serializinghtml ==1.1.5
sqlalchemy ==1.4.44
stack-data ==0.6.2
stopit ==1.1.2
tabulate ==0.9.0
terminado ==0.17.0
throttler ==1.2.2
tinycss2 ==1.2.1
tomli ==2.0.1
toposort ==1.7
tornado ==6.2
traitlets ==5.6.0
typing-extensions ==4.4.0
uc-micro-py ==1.0.1
urllib3 ==1.26.13
wcwidth ==0.2.5
webencodings ==0.5.1
websocket-client ==1.4.2
wrapt ==1.14.1
xarray ==2022.12.0
yte ==1.5.1
zipp ==3.11.0

.github/workflows/build.yaml actions

actions/checkout v3 composite
actions/setup-python v4 composite
codecov/codecov-action v2 composite

.github/workflows/deploy.yaml actions

actions/checkout v3 composite
actions/setup-python v4 composite

requirements/dev.txt pypi

alabaster ==0.7.12 development
anyio ==3.6.2 development
appdirs ==1.4.4 development
argcomplete ==2.0.0 development
argon2-cffi ==21.3.0 development
argon2-cffi-bindings ==21.2.0 development
asttokens ==2.2.1 development
attrs ==22.1.0 development
babel ==2.11.0 development
backcall ==0.2.0 development
beautifulsoup4 ==4.11.1 development
bleach ==5.0.1 development
breathe ==4.34.0 development
build ==0.9.0 development
certifi ==2022.9.24 development
cffi ==1.15.1 development
cfgv ==3.3.1 development
charset-normalizer ==2.1.1 development
click ==8.1.3 development
colorama ==0.4.6 development
colorlog ==6.7.0 development
commonmark ==0.9.1 development
configargparse ==1.5.3 development
connection-pool ==0.0.3 development
contourpy ==1.0.6 development
coverage ==6.5.0 development
cryptography ==38.0.4 development
cycler ==0.11.0 development
datrie ==0.8.2 development
debugpy ==1.6.4 development
decorator ==5.1.1 development
defusedxml ==0.7.1 development
distlib ==0.3.6 development
distro ==1.8.0 development
docstring-to-markdown ==0.11 development
docutils ==0.17.1 development
dpath ==2.1.2 development
entrypoints ==0.4 development
exceptiongroup ==1.0.4 development
executing ==1.2.0 development
fancycompleter ==0.9.1 development
fastjsonschema ==2.16.2 development
filelock ==3.8.1 development
fluiddyn ==0.5.1 development
fluidsim-core ==0.7.2 development
fonttools ==4.38.0 development
fortran-language-server ==1.12.0 development
furo ==2022.9.29 development
gitdb ==4.0.10 development
gitpython ==3.1.30 development
greenlet ==2.0.1 development
h5netcdf ==1.1.0 development
h5py ==3.7.0 development
identify ==2.5.9 development
idna ==3.4 development
imagesize ==1.4.1 development
importlib-metadata ==5.1.0 development
inflection ==0.5.1 development
iniconfig ==1.1.1 development
ipykernel ==6.17.1 development
ipython ==8.7.0 development
jaraco-classes ==3.2.3 development
jedi ==0.18.2 development
jeepney ==0.8.0 development
jinja2 ==3.1.2 development
jsonschema ==4.17.3 development
jupyter-cache ==0.5.0 development
jupyter-client ==7.4.7 development
jupyter-core ==5.1.0 development
jupyter-server ==1.23.3 development
jupyter-server-mathjax ==0.2.6 development
jupyterlab-pygments ==0.2.2 development
keyring ==23.11.0 development
kiwisolver ==1.4.4 development
linkify-it-py ==2.0.0 development
livereload ==2.6.3 development
markdown-it-py ==2.1.0 development
markupsafe ==2.1.1 development
matplotlib ==3.6.2 development
matplotlib-inline ==0.1.6 development
mdit-py-plugins ==0.3.1 development
mdurl ==0.1.2 development
mistune ==2.0.4 development
more-itertools ==9.0.0 development
myst-nb ==0.17.1 development
myst-parser ==0.18.1 development
nbclient ==0.5.13 development
nbconvert ==7.2.5 development
nbdime ==3.1.1 development
nbformat ==5.7.0 development
nest-asyncio ==1.5.6 development
nodeenv ==1.7.0 development
nox ==2022.11.21 development
numpy ==1.23.5 development
packaging ==21.3 development
pandas ==1.5.2 development
pandocfilters ==1.5.0 development
parso ==0.8.3 development
pdbpp ==0.10.3 development
pep517 ==0.13.0 development
pexpect ==4.8.0 development
pickleshare ==0.7.5 development
pillow ==9.3.0 development
pkginfo ==1.9.2 development
plac ==1.3.5 development
platformdirs ==2.5.4 development
pluggy ==1.0.0 development
pre-commit ==2.20.0 development
prometheus-client ==0.15.0 development
prompt-toolkit ==3.0.33 development
psutil ==5.9.4 development
ptyprocess ==0.7.0 development
pulp ==2.7.0 development
pure-eval ==0.2.2 development
pycparser ==2.21 development
pygments ==2.13.0 development
pymech ==1.5.0 development
pyparsing ==3.0.9 development
pyrepl ==0.9.0 development
pyrsistent ==0.19.2 development
pytest ==7.2.0 development
pytest-cov ==4.0.0 development
pytest-datadir ==1.4.1 development
pytest-mock ==3.10.0 development
python-dateutil ==2.8.2 development
python-lsp-jsonrpc ==1.0.0 development
python-lsp-server ==1.6.0 development
pytz ==2022.6 development
pyyaml ==6.0 development
pyzmq ==24.0.1 development
qtpy ==2.3.0 development
readme-renderer ==37.3 development
requests ==2.28.1 development
requests-toolbelt ==0.10.1 development
reretry ==0.11.1 development
rfc3986 ==2.0.0 development
rich ==12.6.0 development
scipy ==1.9.3 development
secretstorage ==3.3.3 development
send2trash ==1.8.0 development
setuptools-scm ==7.0.5 development
six ==1.16.0 development
smart-open ==6.2.0 development
smmap ==5.0.0 development
snakemake ==7.18.2 development
sniffio ==1.3.0 development
snowballstemmer ==2.2.0 development
soupsieve ==2.3.2.post1 development
sphinx ==5.3.0 development
sphinx-autobuild ==2021.3.14 development
sphinx-basic-ng ==1.0.0b1 development
sphinx-copybutton ==0.5.1 development
sphinx-inline-tabs ==2022.1.2b11 development
sphinxcontrib-applehelp ==1.0.2 development
sphinxcontrib-devhelp ==1.0.2 development
sphinxcontrib-htmlhelp ==2.0.0 development
sphinxcontrib-jsmath ==1.0.1 development
sphinxcontrib-qthelp ==1.0.3 development
sphinxcontrib-serializinghtml ==1.1.5 development
sqlalchemy ==1.4.44 development
stack-data ==0.6.2 development
stopit ==1.1.2 development
tabulate ==0.9.0 development
terminado ==0.17.0 development
throttler ==1.2.2 development
tinycss2 ==1.2.1 development
toml ==0.10.2 development
tomli ==2.0.1 development
toposort ==1.7 development
tornado ==6.2 development
traitlets ==5.6.0 development
twine ==4.0.2 development
typing-extensions ==4.4.0 development
uc-micro-py ==1.0.1 development
ujson ==5.6.0 development
urllib3 ==1.26.13 development
virtualenv ==20.17.0 development
wcwidth ==0.2.5 development
webencodings ==0.5.1 development
websocket-client ==1.4.2 development
wmctrl ==0.4 development
wrapt ==1.14.1 development
xarray ==2022.12.0 development
yte ==1.5.1 development
zipp ==3.11.0 development

.github/workflows/draft-pdf.yml actions

actions/checkout v3 composite
actions/upload-artifact v1 composite
openjournals/openjournals-draft-action master composite

docs/examples/snek5000-canonical/pyproject.toml pypi

snek5000 >= 0.9.0

docs/examples/snek5000-canonical/setup.py pypi

docs/examples/snek5000-tgv/setup.py pypi

requirements/main.txt pypi

appdirs ==1.4.4
attrs ==22.1.0
certifi ==2022.12.7
charset-normalizer ==2.1.1
configargparse ==1.5.3
connection-pool ==0.0.3
contourpy ==1.0.6
cycler ==0.11.0
datrie ==0.8.2
distro ==1.8.0
docutils ==0.19
dpath ==2.1.2
fastjsonschema ==2.16.2
filelock ==3.8.1
fluiddyn ==0.5.1
fluidsim-core ==0.7.2
fonttools ==4.38.0
gitdb ==4.0.10
gitpython ==3.1.30
h5netcdf ==1.1.0
h5py ==3.7.0
idna ==3.4
inflection ==0.5.1
jinja2 ==3.1.2
jsonschema ==4.17.3
jupyter-core ==5.1.0
kiwisolver ==1.4.4
markupsafe ==2.1.1
matplotlib ==3.6.2
nbformat ==5.7.0
numpy ==1.23.5
packaging ==21.3
pandas ==1.5.2
pillow ==9.3.0
plac ==1.3.5
platformdirs ==2.5.4
psutil ==5.9.4
pulp ==2.7.0
pymech ==1.5.0
pyparsing ==3.0.9
pyrsistent ==0.19.2
python-dateutil ==2.8.2
pytz ==2022.6
pyyaml ==6.0
qtpy ==2.3.0
requests ==2.28.1
reretry ==0.11.1
six ==1.16.0
smart-open ==6.2.0
smmap ==5.0.0
snakemake ==7.18.2
stopit ==1.1.2
tabulate ==0.9.0
throttler ==1.2.2
toposort ==1.7
traitlets ==5.6.0
urllib3 ==1.26.13
wrapt ==1.14.1
xarray ==2022.12.0
yte ==1.5.1

requirements/tests.txt pypi

appdirs ==1.4.4 test
argcomplete ==2.0.0 test
asttokens ==2.2.1 test
attrs ==22.1.0 test
backcall ==0.2.0 test
certifi ==2022.9.24 test
charset-normalizer ==2.1.1 test
colorlog ==6.7.0 test
configargparse ==1.5.3 test
connection-pool ==0.0.3 test
contourpy ==1.0.6 test
coverage ==6.5.0 test
cycler ==0.11.0 test
datrie ==0.8.2 test
decorator ==5.1.1 test
distlib ==0.3.6 test
distro ==1.8.0 test
docutils ==0.19 test
dpath ==2.1.2 test
exceptiongroup ==1.0.4 test
executing ==1.2.0 test
fastjsonschema ==2.16.2 test
filelock ==3.8.1 test
fluiddyn ==0.5.1 test
fluidsim-core ==0.7.2 test
fonttools ==4.38.0 test
gitdb ==4.0.10 test
gitpython ==3.1.30 test
h5netcdf ==1.1.0 test
h5py ==3.7.0 test
idna ==3.4 test
inflection ==0.5.1 test
iniconfig ==1.1.1 test
ipython ==8.7.0 test
jedi ==0.18.2 test
jinja2 ==3.1.2 test
jsonschema ==4.17.3 test
jupyter-core ==5.1.0 test
kiwisolver ==1.4.4 test
markupsafe ==2.1.1 test
matplotlib ==3.6.2 test
matplotlib-inline ==0.1.6 test
nbformat ==5.7.0 test
nox ==2022.11.21 test
numpy ==1.23.5 test
packaging ==21.3 test
pandas ==1.5.2 test
parso ==0.8.3 test
pexpect ==4.8.0 test
pickleshare ==0.7.5 test
pillow ==9.3.0 test
plac ==1.3.5 test
platformdirs ==2.5.4 test
pluggy ==1.0.0 test
prompt-toolkit ==3.0.33 test
psutil ==5.9.4 test
ptyprocess ==0.7.0 test
pulp ==2.7.0 test
pure-eval ==0.2.2 test
pygments ==2.13.0 test
pymech ==1.5.0 test
pyparsing ==3.0.9 test
pyrsistent ==0.19.2 test
pytest ==7.2.0 test
pytest-cov ==4.0.0 test
pytest-datadir ==1.4.1 test
pytest-mock ==3.10.0 test
python-dateutil ==2.8.2 test
pytz ==2022.6 test
pyyaml ==6.0 test
qtpy ==2.3.0 test
requests ==2.28.1 test
reretry ==0.11.1 test
six ==1.16.0 test
smart-open ==6.2.0 test
smmap ==5.0.0 test
snakemake ==7.18.2 test
stack-data ==0.6.2 test
stopit ==1.1.2 test
tabulate ==0.9.0 test
throttler ==1.2.2 test
tomli ==2.0.1 test
toposort ==1.7 test
traitlets ==5.6.0 test
urllib3 ==1.26.13 test
virtualenv ==20.17.0 test
wcwidth ==0.2.5 test
wrapt ==1.14.1 test
xarray ==2022.12.0 test
yte ==1.5.1 test

requirements/tests-editable.txt pypi

appdirs ==1.4.4 test
argcomplete ==2.0.0 test
asttokens ==2.2.1 test
attrs ==22.1.0 test
backcall ==0.2.0 test
certifi ==2022.9.24 test
charset-normalizer ==2.1.1 test
colorlog ==6.7.0 test
configargparse ==1.5.3 test
connection-pool ==0.0.3 test
contourpy ==1.0.6 test
coverage ==6.5.0 test
cycler ==0.11.0 test
datrie ==0.8.2 test
decorator ==5.1.1 test
distlib ==0.3.6 test
distro ==1.8.0 test
docutils ==0.19 test
dpath ==2.1.2 test
exceptiongroup ==1.0.4 test
executing ==1.2.0 test
fastjsonschema ==2.16.2 test
filelock ==3.8.1 test
fluiddyn ==0.5.1 test
fluidsim-core ==0.7.2 test
fonttools ==4.38.0 test
gitdb ==4.0.10 test
gitpython ==3.1.30 test
h5netcdf ==1.1.0 test
h5py ==3.7.0 test
idna ==3.4 test
inflection ==0.5.1 test
iniconfig ==1.1.1 test
ipython ==8.7.0 test
jedi ==0.18.2 test
jinja2 ==3.1.2 test
jsonschema ==4.17.3 test
jupyter-core ==5.1.0 test
kiwisolver ==1.4.4 test
markupsafe ==2.1.1 test
matplotlib ==3.6.2 test
matplotlib-inline ==0.1.6 test
nbformat ==5.7.0 test
nox ==2022.11.21 test
numpy ==1.23.5 test
packaging ==21.3 test
pandas ==1.5.2 test
parso ==0.8.3 test
pexpect ==4.8.0 test
pickleshare ==0.7.5 test
pillow ==9.3.0 test
plac ==1.3.5 test
platformdirs ==2.5.4 test
pluggy ==1.0.0 test
prompt-toolkit ==3.0.33 test
psutil ==5.9.4 test
ptyprocess ==0.7.0 test
pulp ==2.7.0 test
pure-eval ==0.2.2 test
pygments ==2.13.0 test
pymech ==1.5.0 test
pyparsing ==3.0.9 test
pyrsistent ==0.19.2 test
pytest ==7.2.0 test
pytest-cov ==4.0.0 test
pytest-datadir ==1.4.1 test
pytest-mock ==3.10.0 test
python-dateutil ==2.8.2 test
pytz ==2022.6 test
pyyaml ==6.0 test
qtpy ==2.3.0 test
requests ==2.28.1 test
reretry ==0.11.1 test
six ==1.16.0 test
smart-open ==6.2.0 test
smmap ==5.0.0 test
snakemake ==7.18.2 test
stack-data ==0.6.2 test
stopit ==1.1.2 test
tabulate ==0.9.0 test
throttler ==1.2.2 test
tomli ==2.0.1 test
toposort ==1.7 test
traitlets ==5.6.0 test
urllib3 ==1.26.13 test
virtualenv ==20.17.0 test
wcwidth ==0.2.5 test
wrapt ==1.14.1 test
xarray ==2022.12.0 test
yte ==1.5.1 test