Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / theislab / scanpy-in-R
A guide to using the Python scRNA-seq analysis package Scanpy from R
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/theislab%2Fscanpy-in-R
Stars: 12
Forks: 0
Open Issues: 1
License: mit
Language: HTML
Repo Size: 6.76 MB
Dependencies:
80
Created: about 4 years ago
Updated: 8 months ago
Last pushed: about 4 years ago
Last synced: 7 months ago
Topics: guide, interoperability, python, r, scrna-seq, tutorial
Files
Loading...
Readme
Loading...
Dependencies
environment.yml
conda
- anndata 0.7.1
- blosc 1.18.1
- bzip2 1.0.8
- ca-certificates 2020.4.5.1
- cairo 1.16.0
- certifi 2020.4.5.1
- cycler 0.10.0
- decorator 4.4.2
- fontconfig 2.13.1
- freetype 2.10.1
- get_version 2.1
- gettext 0.19.8.1
- glib 2.58.3
- gmp 6.2.0
- h5py 2.10.0
- hdf5 1.10.5
- icu 64.2
- igraph 0.8.0
- importlib-metadata 1.6.0
- importlib_metadata 1.6.0
- joblib 0.14.1
- kiwisolver 1.2.0
- legacy-api-wrap 1.2
- libblas 3.8.0
- libcblas 3.8.0
- libcxx 10.0.0
- libffi 3.2.1
- libgfortran 4.0.0
- libiconv 1.15
- liblapack 3.8.0
- libllvm8 8.0.1
- libopenblas 0.3.9
- libpng 1.6.37
- libxml2 2.9.10
- llvm-openmp 10.0.0
- llvmlite 0.31.0
- louvain 0.6.1
- matplotlib-base 3.2.1
- mock 3.0.5
- natsort 7.0.1
- ncurses 6.1
- networkx 2.4
- numba 0.48.0
- numexpr 2.7.1
- numpy 1.18.1
- openssl 1.1.1f
- packaging 20.1
- pandas 1.0.3
- patsy 0.5.1
- pcre 8.44
- pip 20.0.2
- pixman 0.38.0
- pycairo 1.19.1
- pyparsing 2.4.7
- pytables 3.6.1
- python 3.6.10
- python-dateutil 2.8.1
- python-igraph 0.8.0
- python_abi 3.6
- pytz 2019.3
- readline 8.0
- scanpy 1.4.6
- scikit-learn 0.22.2.post1
- scipy 1.4.1
- seaborn 0.10.0
- setuptools 46.1.3
- setuptools-scm 3.5.0
- setuptools_scm 3.5.0
- six 1.14.0
- sqlite 3.30.1
- statsmodels 0.11.1
- texttable 1.6.2
- tk 8.6.10
- tornado 6.0.4
- tqdm 4.45.0
- umap-learn 0.4.1
- wheel 0.34.2
- xz 5.2.5
- zipp 3.1.0
- zlib 1.2.11