Ecosyste.ms: Repos

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Package Usage: conda: louvain

This package implements the louvain algorithm in C++ and exposes it to python. It relies on (python-)igraph for it to function. Besides the relative flexibility of the implementation, it also scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The core function is find_partition which finds the optimal partition using the louvain algorithm for a number of different methods.
5 versions
Latest release: over 1 year ago
2 dependent packages

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/louvain

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/vtraag%2Flouvain-igraph

Dependent Repos 11

wtsi-hgi/scrna_cellbender_container
  • environment.yml

Size: 57.6 KB - Last synced: about 2 months ago - Pushed: over 2 years ago

wtsi-hgi/nf_cellbender
Single cell Nextflow cellbender pipeline.
  • 0.6.1.* env/environment.yml

Size: 177 KB - Last synced: about 2 months ago - Pushed: about 2 years ago

rargelaguet/mouse_organogenesis_10x_multiome_publication
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  • >=0.6,!=0.6.2 rna/snakemake/environment.yaml

Size: 2.17 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

CellProfiling/FucciSingleCellSeqPipeline
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model -- RNA-Seq analysis pipeline
  • workflow/envs/environment.yaml

Size: 116 KB - Last synced: 7 months ago - Pushed: 8 months ago

YangLabHKUST/Portal
Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  • 0.7.0 environment.yml

Size: 119 KB - Last synced: 25 days ago - Pushed: 11 months ago

czbiohub/croissants
Croissants & Coding is a beginner-friendly, safe place to learn programming, from “know-nothing” beginners to seasoned developers
  • 2018/olgas_bioinformagician_tricks/environment.yml

Size: 367 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yjgeno/scTenifoldXct
  • !=0.6.2,>=0.6 environment.yml

Size: 530 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

theislab/scanpy-in-R
A guide to using the Python scRNA-seq analysis package Scanpy from R
  • 0.6.1 environment.yml

Size: 6.76 MB - Last synced: 7 months ago - Pushed: about 4 years ago

YangLabHKUST/STitch3D
Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  • 0.7.0.* environment.yml

Size: 11.1 MB - Last synced: about 1 month ago - Pushed: 6 months ago

wentaoStyle/GenKI Fork of yjgeno/GenKI
  • !=0.6.2,>=0.6 environment.yml

Size: 525 KB - Last synced: 9 months ago - Pushed: almost 1 year ago

dpeerlab/SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  • >=0.6,!=0.6.2 environment.yaml

Size: 166 MB - Last synced: 28 days ago - Pushed: 28 days ago

BayraktarLab/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
  • >=0.6.1 environment.yml

Size: 47.4 MB - Last synced: 10 days ago - Pushed: about 1 month ago

JakeLehle/utsa
This is a working repository that I use to pull files I'm currently working on and are not finished yet. Move along.
  • environment.yml

Size: 6.83 MB - Last synced: 3 months ago - Pushed: 3 months ago

fdu-wangfeilab/stDiff
A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  • 0.7.0 environment.yml

Size: 268 MB - Last synced: 18 days ago - Pushed: 3 months ago

cailab-tamu/scTenifoldXct
Manifold learning to detect cell-cell interactions.
  • !=0.6.2,>=0.6 environment.yml

Size: 1.33 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

wtsi-hgi/yascp
scRNA analysis pipeline
  • env/cellbender/v1/environment.yml
  • >=0.7.0 env/nf_scrna_qc/v0/environment.yml
  • >=0.7.0 env/nf_scrna_qc_scaaf/environment.yml

Size: 119 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

saeyslab/spotless-benchmark
A repository for benchmarking spatial deconvolution and mapping tools
  • >=0.6.1 subworkflows/deconvolution/cell2location/environment.yml

Size: 30.2 MB - Last synced: about 13 hours ago - Pushed: about 14 hours ago

dvegaa00/stDiff_Spared
  • 0.7.0 environment.yml

Size: 682 KB - Last synced: 3 days ago - Pushed: 3 days ago