Ecosyste.ms: Repos
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Package Usage: conda: louvain
This package implements the louvain algorithm in C++ and exposes it to python. It relies on (python-)igraph for it to function. Besides the relative flexibility of the implementation, it also scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The core function is find_partition which finds the optimal partition using the louvain algorithm for a number of different methods.
5 versions
Latest release: over 1 year ago
2 dependent packages
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/louvain
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/vtraag%2Flouvain-igraph
Dependent Repos 11
wtsi-hgi/scrna_cellbender_container
- environment.yml
Size: 57.6 KB - Last synced: about 2 months ago - Pushed: over 2 years ago
wtsi-hgi/nf_cellbender
Single cell Nextflow cellbender pipeline.- 0.6.1.* env/environment.yml
Size: 177 KB - Last synced: about 2 months ago - Pushed: about 2 years ago
rargelaguet/mouse_organogenesis_10x_multiome_publication
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""- >=0.6,!=0.6.2 rna/snakemake/environment.yaml
Size: 2.17 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
CellProfiling/FucciSingleCellSeqPipeline
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model -- RNA-Seq analysis pipeline- workflow/envs/environment.yaml
Size: 116 KB - Last synced: 7 months ago - Pushed: 8 months ago
YangLabHKUST/Portal
Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets- 0.7.0 environment.yml
Size: 119 KB - Last synced: 25 days ago - Pushed: 11 months ago
czbiohub/croissants
Croissants & Coding is a beginner-friendly, safe place to learn programming, from “know-nothing” beginners to seasoned developers- 2018/olgas_bioinformagician_tricks/environment.yml
Size: 367 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
yjgeno/scTenifoldXct
- !=0.6.2,>=0.6 environment.yml
Size: 530 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
theislab/scanpy-in-R
A guide to using the Python scRNA-seq analysis package Scanpy from R- 0.6.1 environment.yml
Size: 6.76 MB - Last synced: 7 months ago - Pushed: about 4 years ago
YangLabHKUST/STitch3D
Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices- 0.7.0.* environment.yml
Size: 11.1 MB - Last synced: about 1 month ago - Pushed: 6 months ago
wentaoStyle/GenKI Fork of yjgeno/GenKI
- !=0.6.2,>=0.6 environment.yml
Size: 525 KB - Last synced: 9 months ago - Pushed: almost 1 year ago
dpeerlab/SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data- >=0.6,!=0.6.2 environment.yaml
Size: 166 MB - Last synced: 28 days ago - Pushed: 28 days ago
BayraktarLab/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)- >=0.6.1 environment.yml
Size: 47.4 MB - Last synced: 10 days ago - Pushed: about 1 month ago
JakeLehle/utsa
This is a working repository that I use to pull files I'm currently working on and are not finished yet. Move along.- environment.yml
Size: 6.83 MB - Last synced: 3 months ago - Pushed: 3 months ago
fdu-wangfeilab/stDiff
A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.- 0.7.0 environment.yml
Size: 268 MB - Last synced: 18 days ago - Pushed: 3 months ago
cailab-tamu/scTenifoldXct
Manifold learning to detect cell-cell interactions.- !=0.6.2,>=0.6 environment.yml
Size: 1.33 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
wtsi-hgi/yascp
scRNA analysis pipeline- env/cellbender/v1/environment.yml
- >=0.7.0 env/nf_scrna_qc/v0/environment.yml
- >=0.7.0 env/nf_scrna_qc_scaaf/environment.yml
Size: 119 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
saeyslab/spotless-benchmark
A repository for benchmarking spatial deconvolution and mapping tools- >=0.6.1 subworkflows/deconvolution/cell2location/environment.yml
Size: 30.2 MB - Last synced: about 13 hours ago - Pushed: about 14 hours ago
dvegaa00/stDiff_Spared
- 0.7.0 environment.yml
Size: 682 KB - Last synced: 3 days ago - Pushed: 3 days ago