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GitHub / vembrane / vembrane
vembrane filters VCF records using python expressions
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vembrane%2Fvembrane
Stars: 56
Forks: 5
Open Issues: 8
License: mit
Language: Python
Repo Size: 18.4 MB
Dependencies:
48
Created: almost 4 years ago
Updated: about 2 months ago
Last pushed: about 2 months ago
Last synced: 14 days ago
Commit Stats
Commits: 314
Authors: 10
Mean commits per author: 31.4
Development Distribution Score: 0.478
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/vembrane/vembrane
Topics: bioinformatics, filter, filter-expression, vcf, vcf-filtering
Files
Dependencies
- black ^22.6 develop
- pre-commit ^2.20 develop
- pytest ^7.1 develop
- asttokens ^2.0
- importlib_metadata ^1.7.0
- intervaltree ^3.1
- numpy ^1.23
- pysam ^0.19
- python >=3.8
- pyyaml ^6.0
- actions/checkout v2 composite
- actions/setup-python v1 composite
- julianwachholz/flake8-action v1 composite
- snok/latest-python-versions v1 composite
- JRubics/poetry-publish v1.8 composite
- actions/checkout v2.3.4 composite
- release-drafter/release-drafter v5 composite
- atomicwrites 1.4.1 develop
- attrs 21.4.0 develop
- black 22.6.0 develop
- cfgv 3.3.1 develop
- click 8.1.3 develop
- colorama 0.4.5 develop
- distlib 0.3.4 develop
- filelock 3.7.1 develop
- identify 2.5.1 develop
- iniconfig 1.1.1 develop
- mypy-extensions 0.4.3 develop
- nodeenv 1.7.0 develop
- packaging 21.3 develop
- pathspec 0.9.0 develop
- platformdirs 2.5.2 develop
- pluggy 1.0.0 develop
- pre-commit 2.20.0 develop
- py 1.11.0 develop
- pyparsing 3.0.9 develop
- pytest 7.1.2 develop
- toml 0.10.2 develop
- tomli 2.0.1 develop
- typing-extensions 4.3.0 develop
- virtualenv 20.15.1 develop
- asttokens 2.0.5
- intervaltree 3.1.0
- numpy 1.23.1
- pysam 0.19.1
- pyyaml 6.0
- six 1.16.0
- sortedcontainers 2.4.0