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GitHub / villafup / GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/villafup%2FGenomeInfoDb
Fork of Bioconductor/GenomeInfoDb
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: R
Repo Size: 82.7 MB
Dependencies:
22
Created: almost 2 years ago
Updated: 10 months ago
Last pushed: 10 months ago
Last synced: 10 months ago
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Dependencies
DESCRIPTION
cran
- BiocGenerics >= 0.37.0 depends
- IRanges >= 2.13.12 depends
- R >= 4.0.0 depends
- S4Vectors >= 0.25.12 depends
- methods * depends
- GenomeInfoDbData * imports
- RCurl * imports
- stats * imports
- stats4 * imports
- utils * imports
- BSgenome * suggests
- BSgenome.Celegans.UCSC.ce2 * suggests
- BSgenome.Hsapiens.NCBI.GRCh38 * suggests
- BSgenome.Scerevisiae.UCSC.sacCer2 * suggests
- BiocStyle * suggests
- GenomicAlignments * suggests
- GenomicFeatures * suggests
- GenomicRanges * suggests
- RUnit * suggests
- Rsamtools * suggests
- TxDb.Dmelanogaster.UCSC.dm3.ensGene * suggests
- knitr * suggests