Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: cran: BSgenome.Hsapiens.NCBI.GRCh38

View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/BSgenome.Hsapiens.NCBI.GRCh38

Dependent Repos 22

jorainer/ensembldb
This is the ensembldb development repository.
  • * DESCRIPTION

Size: 6.57 MB - Last synced: 4 days ago - Pushed: 21 days ago

lgatto/Pbase
Manipluating and exploring protein and proteomics data
  • * DESCRIPTION

Size: 24.2 MB - Last synced: 7 months ago - Pushed: over 4 years ago

neurogenomics/MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statistics
  • * DESCRIPTION

Size: 8.7 MB - Last synced: 4 days ago - Pushed: 4 days ago

Bioconductor/GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
  • * DESCRIPTION

Size: 83 MB - Last synced: 4 days ago - Pushed: 6 days ago

Bioconductor/BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
  • * DESCRIPTION

Size: 11.3 MB - Last synced: 4 days ago - Pushed: 6 days ago

r-pkg-team/r-bioc-genomeinfodb
r-bioc-genomeinfodb packaging
  • * DESCRIPTION

Last synced: about 1 year ago

r-pkg-team/r-bioc-bsgenome
r-bioc-bsgenome packaging
  • * DESCRIPTION

Last synced: about 1 year ago

r-pkg-team/r-bioc-ensembldb
r-bioc-ensembldb packaging
  • * DESCRIPTION

Last synced: over 1 year ago

Przemol/seqplots_osx
SeqPlots OS X package
  • * SeqPlots.app/Contents/Resources/Rbin/Versions/3.2/Resources/library/GenomeInfoDb/DESCRIPTION

Size: 502 MB - Last synced: about 1 year ago - Pushed: over 7 years ago

guillaumecharbonnier/colab-r-libs
A test to see how I could save installation time for R libs each time I start a Colab notebook
  • * GenomeInfoDb/DESCRIPTION

Size: 156 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

cran/SNPassoc
:exclamation: This is a read-only mirror of the CRAN R package repository. SNPassoc — SNPs-Based Whole Genome Association Studies. Homepage: https://github.com/isglobal-brge/SNPassoc
  • * DESCRIPTION

Size: 6.18 MB - Last synced: 6 months ago - Pushed: over 1 year ago

demuellae/muRtools
Fabian's R tools
  • * DESCRIPTION

Size: 354 KB - Last synced: 8 months ago - Pushed: 8 months ago

dieterich-lab/JACUSA2helper
Auxiliary R package for assessment of JACUSA2 results
  • * DESCRIPTION

Size: 131 MB - Last synced: about 2 months ago - Pushed: 7 months ago

kendomaniac/embl120215
Exercises for EMBL Course 2015
  • * DESCRIPTION

Size: 3.96 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

isglobal-brge/SNPassoc
Genetic association studies
  • * DESCRIPTION

Size: 1.94 MB - Last synced: 6 months ago - Pushed: about 1 year ago

mikelove/alpine
Modeling and correcting fragment sequence bias for RNA-seq
  • * DESCRIPTION

Size: 1.28 MB - Last synced: 4 days ago - Pushed: about 6 years ago

GreenleafLab/ChrAccR
Analyzing chromatin accessibility data in R
  • * DESCRIPTION

Size: 10 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

cruk-mi/sclc-cfdna-methylome-profiling
  • * mesa/DESCRIPTION

Last synced: over 1 year ago

xuqian-git/R_libs
Compiled R dependencies for Solgenomics & Breedbase databases, for faster install of docker etc.
  • * GenomeInfoDb/DESCRIPTION

Last synced: over 1 year ago

satishgaurav/discoverapp_rubiustx
  • * packrat/lib/x86_64-pc-linux-gnu/3.6.3/GenomeInfoDb/DESCRIPTION

Size: 817 MB - Last synced: over 1 year ago

villafup/GenomeInfoDb Fork of Bioconductor/GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
  • * DESCRIPTION

Size: 82.7 MB - Last synced: 10 months ago - Pushed: 10 months ago

GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
  • * DESCRIPTION

Size: 637 MB - Last synced: 10 months ago - Pushed: 10 months ago

guillaumecharbonnier/colab-r-libs-gviz
R libraries installed in Colab to use Gviz
  • * BSgenome/DESCRIPTION
  • * GenomeInfoDb/DESCRIPTION

Size: 144 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

demuellae/muBioAnnotatR
R package for annotating biological entities
  • * DESCRIPTION

Size: 40 KB - Last synced: 8 months ago - Pushed: over 3 years ago

wenweixiong/MARVEL
  • >= 1.3.1000 DESCRIPTION

Size: 12.1 MB - Last synced: 7 months ago - Pushed: 7 months ago

GenomicsNX/bambu Fork of GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
  • * DESCRIPTION

Size: 97.9 MB - Last synced: 28 days ago - Pushed: about 3 years ago

GenomicsNX/alpine Fork of mikelove/alpine
Modeling and correcting fragment sequence bias for RNA-seq
  • * DESCRIPTION

Size: 577 KB - Last synced: 28 days ago - Pushed: over 7 years ago

bioc/MungeSumstats
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 8.49 MB - Last synced: 1 day ago - Pushed: 1 day ago

isilta/BSgenome-canFam4 Fork of Bioconductor/BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
  • * DESCRIPTION

Size: 11.3 MB - Last synced: 10 months ago - Pushed: 10 months ago

Schaudge/bambu Fork of GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
  • * DESCRIPTION

Size: 548 MB - Last synced: 18 days ago - Pushed: 18 days ago

mykmal/MungeSumstats Fork of neurogenomics/MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statistics
  • * DESCRIPTION

Size: 7.63 MB - Last synced: 6 months ago - Pushed: 6 months ago

jleechung/bambu Fork of GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
  • * DESCRIPTION

Size: 97.9 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

cran/MARVEL
:exclamation: This is a read-only mirror of the CRAN R package repository. MARVEL — Revealing Splicing Dynamics at Single-Cell Resolution
  • >= 1.3.1000 DESCRIPTION

Size: 6.05 MB - Last synced: 9 months ago - Pushed: over 1 year ago

bioc/GenomeInfoDb
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 82.9 MB - Last synced: 5 days ago - Pushed: 5 days ago

Mordziarz/bambu Fork of GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
  • * DESCRIPTION

Size: 637 MB - Last synced: 8 months ago - Pushed: 8 months ago

lingminhao/bambu
bambu for singlecell
  • * DESCRIPTION

Size: 654 MB - Last synced: 5 months ago - Pushed: 7 months ago

aryeelab/scmeth
  • * DESCRIPTION

Size: 2.5 MB - Last synced: 4 months ago - Pushed: almost 5 years ago

dauss75/galaxy-R3.2.5
R3.2.5
  • * 3.2.5/R-3.2.5/lib/R/library/GenomeInfoDb/DESCRIPTION

Size: 162 MB - Last synced: 3 months ago - Pushed: over 7 years ago

cruk-mi/mesa
mesa package for Methylation Enrichment Sequencing Analysis
  • * DESCRIPTION

Size: 24.9 MB - Last synced: 4 days ago - Pushed: 5 days ago

IudiHub/BAMAlignR
An innovative R package designed for genomic data analysis. It efficiently reads BAM files, extracts specific read entries, and visualizes precise read-to-genome alignments based on the CIGAR string. With BAMAlignR, researchers can gain deeper insights into genomic variations and structural variants, enhancing their analytical workflows.
  • * DESCRIPTION

Size: 2.46 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

bioc/NanoporeRNASeq
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 107 MB - Last synced: 1 day ago - Pushed: 1 day ago

alyssa-calico/ChrAccR
  • * DESCRIPTION

Size: 9.82 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

bioc/BSgenome
This is a read-only mirror of the git repos at https://bioconductor.org
  • * DESCRIPTION

Size: 11.3 MB - Last synced: 5 days ago - Pushed: 5 days ago

alyssa-calico/ChrAccRMACS
  • * DESCRIPTION

Size: 9.88 MB - Last synced: about 1 month ago - Pushed: about 1 month ago