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GitHub / waldronlab / curatedMetagenomicDataAnalyses

Analyses in R and Python Using curatedMetagenomicData

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/waldronlab%2FcuratedMetagenomicDataAnalyses

Stars: 19
Forks: 5
Open Issues: 4

License: cc-by-4.0
Language: Python
Repo Size: 239 MB
Dependencies: 38

Created: about 3 years ago
Updated: 2 months ago
Last pushed: over 1 year ago
Last synced: 18 days ago

Topics: bioconductor, microbiome-analysis, microbiome-data, r

Files

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Readme

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Dependencies

DESCRIPTION cran

curatedMetagenomicData * imports
dplyr * imports
meta * imports
ANCOMBC * suggests
BiocStyle * suggests
DT * suggests
RefManageR * suggests
SIAMCAT * suggests
TreeSummarizedExperiment * suggests
forcats * suggests
ggplot2 * suggests
ggrepel * suggests
ggsignif * suggests
gtsummary * suggests
hrbrthemes * suggests
kableExtra * suggests
knitr * suggests
mia * suggests
rmarkdown * suggests
scater * suggests
sessioninfo * suggests
snakecase * suggests
stringr * suggests
table1 * suggests
tibble * suggests
tidyr * suggests
tidyverse * suggests
uwot * suggests
vegan * suggests

.github/workflows/check-bioc.yml actions

actions/cache v2 composite
actions/checkout v3 composite
actions/upload-artifact master composite
docker/build-push-action v3 composite
docker/metadata-action v4 composite
docker/setup-buildx-action v2 composite
r-lib/actions/setup-pandoc master composite
r-lib/actions/setup-r master composite

Dockerfile docker

bioconductor/bioconductor_docker RELEASE_3_13 build