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GitHub / widdowquinn / pyani
Application and Python module for average nucleotide identity analyses of microbes.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/widdowquinn%2Fpyani
Stars: 181
Forks: 54
Open Issues: 54
License: mit
Language: Python
Repo Size: 185 MB
Dependencies:
64
Created: over 9 years ago
Updated: 9 days ago
Last pushed: about 1 month ago
Last synced: 3 days ago
Commit Stats
Commits: 1736
Authors: 14
Mean commits per author: 124.0
Development Distribution Score: 0.519
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/widdowquinn/pyani
Topics: ani, average-nucleotide-identity, bioinformatics, classification, taxonomy, taxonomy-assignment
Files
Dependencies
- bandit *
- black *
- blacken-docs *
- codecov *
- coverage *
- doc8 *
- flake8 *
- jinja2 *
- mypy *
- pre-commit *
- pydocstyle *
- pylint *
- pytest *
- pytest-cov *
- rstcheck *
- sphinx *
- biopython *
- matplotlib *
- namedlist *
- networkx *
- pandas *
- scipy *
- seaborn *
- sqlalchemy *
- tqdm *
- actions/checkout v4 composite
- actions/upload-artifact v4 composite
- codacy/codacy-coverage-reporter-action v1 composite
- codecov/codecov-action v3 composite
- conda-incubator/setup-miniconda v3 composite
- actions/checkout v4 composite
- actions/upload-artifact v4 composite
- codacy/codacy-coverage-reporter-action v1 composite
- codecov/codecov-action v3 composite
- conda-incubator/setup-miniconda v3 composite
- blast *
- blast-legacy *
- mummer =3.23
- blast *
- blast-legacy *
- mummer =3.23=h6de7cb9_11