GitHub topics: biorxiv
jonatasgrosman/findpapers
Findpapers: A tool for helping researchers who are looking for related works
Language: Python - Size: 5.06 MB - Last synced at: 1 day ago - Pushed at: over 1 year ago - Stars: 277 - Forks: 38
jannisborn/paperscraper
Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.
Language: Python - Size: 2.49 MB - Last synced at: 7 days ago - Pushed at: 24 days ago - Stars: 409 - Forks: 47
LieberInstitute/HumanPilot
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
Language: HTML - Size: 289 MB - Last synced at: 14 days ago - Pushed at: over 1 year ago - Stars: 83 - Forks: 31
Dianel555/paper-search-mcp-nodejs
A Node.js implementation of the Model Context Protocol (MCP) server for searching and downloading academic papers from multiple sources, including **Web of Science**, arXiv, and more.
Language: TypeScript - Size: 158 KB - Last synced at: about 17 hours ago - Pushed at: 28 days ago - Stars: 2 - Forks: 1
ropensci/medrxivr
Access and search medRxiv and bioRxiv preprint data
Language: R - Size: 206 KB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 57 - Forks: 8
quantixed/manuscript-templates
LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
Language: TeX - Size: 3.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 93 - Forks: 47
TalSchuster/BiorxivRetriever
Simple python retriever for Biorxiv articles
Language: Python - Size: 21.5 KB - Last synced at: 7 days ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 3
Huang-lab/GetFreeCopy
Get Free Copy: A Multi-Repository Search Platform for Biomedical Publications
Language: SCSS - Size: 5.11 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 3 - Forks: 2
xnought/biogen
GPT-like model to generate bioRxiv paper titles
Language: Jupyter Notebook - Size: 11.1 MB - Last synced at: about 2 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
greenelab/annorxiver
Annotating Rxiv preprints in an automated fashion
Language: Jupyter Notebook - Size: 402 MB - Last synced at: 29 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 3
elliothershberg/orchard-app
An integrated set of tools for exploring the oRchard of science 🎈
Language: TypeScript - Size: 1.96 MB - Last synced at: 6 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
jacquerie/biorxiv-cli
A Python wrapper for the bioRxiv API.
Language: Python - Size: 202 KB - Last synced at: 14 days ago - Pushed at: about 4 years ago - Stars: 10 - Forks: 3
SingularityLabs-ai/bard-scientific-publications-extension
Google's Bard Scientific Publications Extension (supports: arxiv, biorxiv, pubmed, ieeexplore, Sciencedirect, ACM, Nature, Cell)
Language: TypeScript - Size: 18.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
Imamachi-n/BioRxivCurator
Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.
Language: Python - Size: 21.5 KB - Last synced at: 4 months ago - Pushed at: over 5 years ago - Stars: 11 - Forks: 3
urmi-21/COVID-biorxiv
Flexible query for biorxiv and medRxiv COVID-19 collection
Language: Python - Size: 4.21 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 1
BioGRID/Coronavirus-Biorxiv-Triage
A simple script to take the Biorxiv Coronavirus Collection and Triage it for interaction terms
Language: Python - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1
greenelab/annorxiver_manuscript
This manuscript covers the annorxiver project.
Language: HTML - Size: 135 MB - Last synced at: 4 months ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 4
junthbasnet/bioRxiv-COVID19-Sanity
🦠😷 Organizes COVID-19 SARS-CoV-2 preprints from medRxiv(preprint server for the health sciences) and bioRxiv(preprint server for biology) and uses Exemplar SVM to show similar results.
Language: Python - Size: 19.8 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
muktapalshikar/getwriting
Clean, beautiful Latex template for academic articles
Language: TeX - Size: 25.5 MB - Last synced at: 2 days ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2
choderalab/AurA-materials
Code and data for AurA simulations
Language: Jupyter Notebook - Size: 279 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 2
dhimmel/biorxiv-licenses
The licensing of bioRxiv preprints
Language: Jupyter Notebook - Size: 5.4 MB - Last synced at: 5 months ago - Pushed at: about 8 years ago - Stars: 8 - Forks: 0
EvdH0/ODity-growth-E-coli
This is the full data analysis accompanying the pre-print 'Quantifying live bacterial densities using non-invasive optical measurements of E. coli' on bioRxiv.
Language: Jupyter Notebook - Size: 20.6 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
Quiltomics/godseye
Monitor biomedical trends visually across ALL of PubMed + bioRxiv
Language: Python - Size: 60.5 KB - Last synced at: 7 months ago - Pushed at: almost 7 years ago - Stars: 9 - Forks: 2
andrewgcodes/bio2csv
scrape biorxiv in one line of code.
Language: Python - Size: 39.1 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
greenelab/preprint-bot 📦
Twitter bot that tweets preprints and comments from BioRxiv and MedRxiv
Language: JavaScript - Size: 7.14 MB - Last synced at: 4 months ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1
greenelab/greenblack
Does green OA via preprinting reduce Sci-Hub usage?
Language: Jupyter Notebook - Size: 986 KB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0
jibanCat/neuroscience-biorxiv-topics
extracting general topics in biorxiv neuroscience collection, based on Rxivist. It would be a comparison to https://github.com/jibanCat/astro-ph-ml-topics
Language: Python - Size: 136 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
LieberInstitute/marchionni_projects
Collaboration with Luigi Marchionni (JHU) and RIKEN with recount2 data
Language: Shell - Size: 193 MB - Last synced at: about 1 month ago - Pushed at: almost 6 years ago - Stars: 3 - Forks: 1
BioGRID/BioGRID-BioRxiv-Fetcher
A simple script to download publication annotation from BioRxiv
Language: Python - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1
OldBonhart/EDA-NLP-PubMed-and-bioRxiv
Rapid analysis of scientific papers from bioRxiv and PubMed
Language: Jupyter Notebook - Size: 324 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
dilawar/SinghAndBhalla_CaMKII_SubunitExchange_2018
Subunit exchange enhances information retention by CaMKII in dendritic spines
Language: TeX - Size: 55.8 MB - Last synced at: 7 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 2
