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GitHub topics: contact-matrices

epiverse-trace/tutorials-late

Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.

Language: R - Size: 17.6 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 2 - Forks: 1

idem-lab/conmat

Create Contact Matrices from Population Data

Language: R - Size: 111 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 20 - Forks: 2

4dn-dcic/hic2cool

Lightweight converter between hic and cool contact matrices.

Language: Python - Size: 142 MB - Last synced at: 18 days ago - Pushed at: 10 months ago - Stars: 69 - Forks: 7

kuzobuta/hic_paper_NG_2019

Processed data set of Miura et al., Nature Genetics, 2019

Language: R - Size: 193 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 3

Related Keywords
contact-matrices 4 hi-c 2 bioinformatics 2 repli-seq 1 genomics 1 3d-genome 1 juicer 1 cooler 1 converter 1 r 1 public-health 1 population-data 1 infectious-diseases 1 vaccination 1 scenario-modelling 1 rstats 1 outbreak-analysis 1 non-pharmaceutical-interventions 1 infectious-disease-dynamics 1 epiverse 1 contact-matrix 1 carpentries-workbench 1 burden-of-disease 1