GitHub topics: core-package
Bioconductor/txdbmaker
A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)
Language: R - Size: 1.06 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 3 - Forks: 1
Bioconductor/GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Language: R - Size: 82.8 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 33 - Forks: 13
Bioconductor/SummarizedExperiment
A container (S4 class) for matrix-like assays
Language: R - Size: 1.26 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 35 - Forks: 9
Bioconductor/UniProt.ws
R Interface to UniProt Web Services
Language: R - Size: 1.61 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 5 - Forks: 7
Bioconductor/AnnotationHub
Client for the Bioconductor AnnotationHub web resource
Language: R - Size: 1.45 MB - Last synced at: 3 days ago - Pushed at: 9 days ago - Stars: 19 - Forks: 15
Bioconductor/ExperimentHub
Client to access ExperimentHub resources
Language: R - Size: 269 KB - Last synced at: 3 days ago - Pushed at: 9 days ago - Stars: 10 - Forks: 14
Bioconductor/AnnotationHubData
Transform public data resources into Bioconductor Data Structures
Language: R - Size: 23.7 MB - Last synced at: 3 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 6
Bioconductor/DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasets
Language: R - Size: 1.62 MB - Last synced at: 3 days ago - Pushed at: 13 days ago - Stars: 27 - Forks: 9
Bioconductor/Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Language: R - Size: 13.8 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 28 - Forks: 28
mojaloop/central-services-shared
Shared code for central services
Language: JavaScript - Size: 6.31 MB - Last synced at: 5 days ago - Pushed at: 10 days ago - Stars: 2 - Forks: 25
Bioconductor/BSgenomeForge
Forge your own BSgenome data package
Language: R - Size: 202 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 3
Bioconductor/BiocBaseUtils
Language: R - Size: 54.7 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 1
Bioconductor/S4Arrays
Foundation of array-like containers in Bioconductor
Language: R - Size: 459 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 6 - Forks: 1
Bioconductor/BiocIO
Standard input / output framework for use by Bioconductor packages
Language: R - Size: 70.3 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 0
Bioconductor/BiocSet
Representing Different Biological Sets
Language: R - Size: 395 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 0
Bioconductor/zlibbioc
An R packaged zlib-1.2.5
Language: C - Size: 229 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 3
Bioconductor/VariantAnnotation
Annotation of Genetic Variants
Language: R - Size: 3.68 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 28 - Forks: 20
Bioconductor/Rhtslib
HTSlib high-throughput sequencing library as an R package
Language: C - Size: 7.45 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 11 - Forks: 13
Bioconductor/RBGL
An interface to the BOOST graph library
Language: C++ - Size: 27.5 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 7
Bioconductor/OrganismDbi
Software to enable the smooth interfacing of different database packages
Language: R - Size: 441 KB - Last synced at: 8 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 2
Bioconductor/KEGGREST
Client-side REST access to KEGG
Language: R - Size: 128 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 11 - Forks: 5
Bioconductor/Icens
NPMLE for Censored and Truncated Data
Language: R - Size: 75.2 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0
Bioconductor/hypergraph
A package providing hypergraph data structures
Language: R - Size: 80.1 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 0
Bioconductor/GSEABase
Gene set enrichment data structures and methods
Language: R - Size: 374 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 5 - Forks: 12
Bioconductor/graph
graph: A package to handle graph data structures
Language: R - Size: 1.36 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 5 - Forks: 9
Bioconductor/gpls
Classification using generalized partial least squares
Language: R - Size: 60.5 KB - Last synced at: 8 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 1
Bioconductor/GenomicRanges
Representation and manipulation of genomic intervals
Language: R - Size: 8.97 MB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 45 - Forks: 18
Bioconductor/GenomicFiles
Distributed computing by file or by range
Language: R - Size: 1020 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 6
Bioconductor/GenomicFeatures
Query the gene models of a given organism/assembly
Language: R - Size: 45.8 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 27 - Forks: 12
Bioconductor/GenomicAlignments
Representation and manipulation of short genomic alignments
Language: R - Size: 6.09 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 10 - Forks: 15
Bioconductor/geneplotter
Graphics related functions for Bioconductor
Language: R - Size: 7.32 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 3 - Forks: 2
Bioconductor/GeneMeta
MetaAnalysis for High Throughput Experiments
Language: R - Size: 30.5 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 3
Bioconductor/genefilter
genefilter: methods for filtering genes from high-throughput experiments
Language: R - Size: 1.15 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 5 - Forks: 5
Bioconductor/DynDoc
Dynamic document tools
Language: R - Size: 98.6 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0
Bioconductor/CoCiteStats
Different test statistics based on co-citation.
Language: R - Size: 56.6 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 1
Bioconductor/chipseq
chipseq: A package for analyzing chipseq data
Language: R - Size: 33.6 MB - Last synced at: 8 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 2
Bioconductor/Category
Category Analysis
Language: R - Size: 495 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 5
Bioconductor/bioDist
Different distance measures
Language: R - Size: 92.8 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0
Bioconductor/biocViews
Categorized views of R package repositories
Language: R - Size: 1.49 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 4
Bioconductor/Biobase
Biobase: Base functions for Bioconductor
Language: R - Size: 5.62 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 9 - Forks: 10
Bioconductor/AnnotationForge
Tools for building SQLite-based annotation data packages
Language: R - Size: 25.1 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 5 - Forks: 9
Bioconductor/AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Language: R - Size: 5.36 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 9 - Forks: 10
Bioconductor/annotate
Annotation for microarrays
Language: R - Size: 2.46 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 7
Bioconductor/ShortRead
Language: R - Size: 7.14 MB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 8 - Forks: 6
Bioconductor/ExperimentHubData
Add resources to ExperimentHub
Language: R - Size: 344 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 5
Bioconductor/IRanges
Foundation of integer range manipulation in Bioconductor
Language: R - Size: 4.29 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 22 - Forks: 11
Bioconductor/BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Language: R - Size: 11.3 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 9 - Forks: 8
Bioconductor/S4Vectors
Foundation of vector-like and list-like containers in Bioconductor
Language: R - Size: 1.44 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 17 - Forks: 22
Bioconductor/HDF5Array
HDF5 datasets as array-like objects in R
Language: R - Size: 8.69 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 12 - Forks: 14
Bioconductor/XVector
Foundation of external vector representation and manipulation in Bioconductor
Language: C - Size: 237 KB - Last synced at: 8 days ago - Pushed at: 15 days ago - Stars: 3 - Forks: 4
Bioconductor/BiocGenerics
Defines many S4 generic functions used in Bioconductor
Language: R - Size: 337 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 12 - Forks: 9
Bioconductor/RaggedExperiment
Matrix-like representations of mutation and CN data
Language: R - Size: 261 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 3
Bioconductor/BiocFileCache
Manage Files Across Sessions
Language: R - Size: 487 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 13 - Forks: 9
Bioconductor/AnnotationFilter
Facilities for Filtering Bioconductor Annotation Resources
Language: R - Size: 174 KB - Last synced at: 9 days ago - Pushed at: 15 days ago - Stars: 5 - Forks: 3
Bioconductor/Organism.dplyr
Language: R - Size: 2.21 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 3 - Forks: 3
Bioconductor/BiocStyle
Issues and pull requests for BiocStyle should go here.
Language: R - Size: 572 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 12 - Forks: 20
Bioconductor/MatrixGenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
Language: R - Size: 384 KB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 12 - Forks: 1
Bioconductor/BiocParallel
Bioconductor facilities for parallel evaluation
Language: R - Size: 1.22 MB - Last synced at: 5 days ago - Pushed at: 15 days ago - Stars: 67 - Forks: 30
Bioconductor/BiocVersion
Size: 19.5 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 1
Bioconductor/SparseArray
High-performance sparse data representation and manipulation in R
Language: C - Size: 1 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 9 - Forks: 2
mojaloop/sdk-standard-components
A set of components that encode standard practices for interacting with Mojaloop API compliant systems
Language: JavaScript - Size: 6.34 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 6 - Forks: 23
Bioconductor/Biostrings
Efficient manipulation of biological strings
Language: R - Size: 30.3 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 62 - Forks: 17
Bioconductor/UCSC.utils
Low-level utilities to retrieve data from the UCSC Genome Browser
Language: R - Size: 92.8 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 1 - Forks: 0
Bioconductor/updateObject
Find/fix old serialized S4 instances
Language: R - Size: 1.06 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 1 - Forks: 0
mojaloop/ml-reference-connectors
EXPERIMENTAL: Mojaloop reference connectors which can be used the sdk scheme adapter
Language: TypeScript - Size: 3.19 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 2
mojaloop/ml-schema-transformer-lib
Common code and schemas used in ML services to transform between schemas
Language: TypeScript - Size: 1.79 MB - Last synced at: about 2 hours ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
mojaloop/ml-schema-validator
A Mojaloop library that contains Joi validation schemas defined in the Mojaloop API Specification
Language: JavaScript - Size: 542 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 2
mojaloop/central-services-logger
Common shared Logging lib for Mojaloop components
Language: JavaScript - Size: 2.93 MB - Last synced at: 12 days ago - Pushed at: 20 days ago - Stars: 1 - Forks: 12
mojaloop/central-services-stream
Language: JavaScript - Size: 2.04 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 2 - Forks: 16
mojaloop/event-sdk
Event SDK for Client & Server implementations
Language: TypeScript - Size: 2.63 MB - Last synced at: 4 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 12
mojaloop/central-services-metrics
central-services-metrics
Language: TypeScript - Size: 1.08 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 13
mojaloop/database-lib
Shared database code for central services (previously @mojaloop/central-services-database)
Language: JavaScript - Size: 1.96 MB - Last synced at: 18 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 15
mojaloop/object-store-lib
Common object persistence store library to manage larger messages (in the order of MBs)
Language: JavaScript - Size: 1.68 MB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 9
mojaloop/central-services-error-handling
Hapi error handling module
Language: JavaScript - Size: 1.65 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 18
mojaloop/central-services-health
Shared server config for making configurable health check handlers for Hapi and standalone health checks.
Language: TypeScript - Size: 1.61 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 0 - Forks: 8
mojaloop/ml-testing-toolkit-shared-lib
RELEASE: Library for shared code between Mojaloop testing-toolkit backend and frontend
Language: JavaScript - Size: 1.15 MB - Last synced at: 12 days ago - Pushed at: 2 months ago - Stars: 0 - Forks: 7
mojaloop/ml-number
Mojaloop Number Library implementation that handles decimal processing of amounts/numbers
Language: JavaScript - Size: 989 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 6
Bioconductor/GoogleGenomics
[DEPRECATED] An R package for Google Genomics API queries.
Language: R - Size: 379 KB - Last synced at: 3 days ago - Pushed at: about 2 years ago - Stars: 45 - Forks: 23
Bioconductor/GOstats
Tools for manipulating GO and microarrays.
Language: TeX - Size: 26 MB - Last synced at: 2 months ago - Pushed at: 6 months ago - Stars: 4 - Forks: 2
Bioconductor/ensemblVEP
[DEPRECATED] R Interface to Ensembl Variant Effect Predictor
Language: R - Size: 192 KB - Last synced at: 3 days ago - Pushed at: 12 months ago - Stars: 5 - Forks: 3
Bioconductor/Ensembl.utils
Low-level utilities to retrieve data from Ensembl
Language: R - Size: 2.93 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Bioconductor/NCBI.utils
Low-level utilities to retrieve data from NCBI
Size: 1.95 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Bioconductor/RGalaxy
Make an R function available in the Galaxy web platform
Language: R - Size: 530 KB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 2
Bioconductor/BiocCaseStudies
BiocCaseStudies: Support for the Case Studies Monograph
Language: R - Size: 11.4 MB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
mojaloop/auth-lib 📦
Share authentication and authorization code for central services
Language: JavaScript - Size: 1.12 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 6
Bioconductor/ppiStats
Protein-Protein Interaction Statistical Package
Language: R - Size: 3.34 MB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
mojaloop/finance-portal-lib
EXPERIMENTAL - Shared library for the finance portal backend services
Language: JavaScript - Size: 2.59 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 1 - Forks: 2
mojaloop/apm-agent-nodejs-opentracing Fork of elastic/apm-agent-nodejs-opentracing
**EXPERIMENTAL** Mojaloop Customised OpenTracing bridge for the Elastic APM Node.js Agent
Language: JavaScript - Size: 52.7 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1
mojaloop/apm-agent-nodejs Fork of elastic/apm-agent-nodejs
**EXPERIMENTAL** Mojaloop Customised Elastic APM Node.js Agent
Language: JavaScript - Size: 2.59 MB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1
di-unipi-socc/FogDirMime
Core API of a simulation environment of Fog application management with CISCO FogDirector.
Language: Python - Size: 61.5 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 2
