Data

Tools

Indexes

Applications

Experiments

Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: dnabert-model

baksho/antimicrobial-resistance-transformer

Predict antomicrobial resistance (AMR) for a pathogen (Staphylococcus aureus) against an antibiotic (Cefoxitin) using encoder-only transformer given the genomic sequence of one of its genes (gene pbp4) as input.

Size: 1.95 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

lanl/EPBD-BERT

Transcription factor binding site prediction for novel DNA sequence data aiding in mutation identification and drug discovery

Language: Jupyter Notebook - Size: 4.17 MB - Last synced at: 1 day ago - Pushed at: 9 months ago - Stars: 7 - Forks: 1

jerryji1993/DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Language: Python - Size: 11.4 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 604 - Forks: 158

MChatzakis/promoter-detection

Promoter detection of DNA sequences using Transformers from scratch and DNABERT

Language: Jupyter Notebook - Size: 10.3 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Related Keywords
dnabert-model 4 transformer 1 self-attention 1 promoter-detection 1 dna-sequences 1 bert-embeddings 1 sequence 1 nlp 1 natural-language-processing 1 machine-learning 1 kmer-format 1 kmer 1 gpu 1 genome 1 deep-learning 1 transformers-bert 1 multi-modal 1 epbd 1 cross-attention 1 transformers 1 encoder 1 antimicrobial-resistance 1