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GitHub topics: morphology-analysis

tengjuilin/vampire-analysis

VAMPIRE (Visually Aided Morpho-Phenotyping Image Recognition) analysis quantifies and visualizes heterogeneity of cell and nucleus morphology.

Language: Python - Size: 4.16 MB - Last synced at: 11 days ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

amatov/NeurodegenerationMitochondriaLysosomes

Language: MATLAB - Size: 26.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

amatov/DataSetTracker

DataSet Tracker is a software suite for real-time image analysis designed to run on personal computers, smartphones, and smart glasses hardware and suitable for resource-constrained computing

Language: C# - Size: 145 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

BlueBrain/NeuroMorphoVis

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

Language: Python - Size: 133 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 138 - Forks: 28

DanuserLab/u-unwrap3D

Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.

Language: Jupyter Notebook - Size: 52.7 MB - Last synced at: 16 days ago - Pushed at: 3 months ago - Stars: 29 - Forks: 2

mssrchapelier/tigre-parser

A rule-based morphological analyser for Tigre (Eritrea) in Java (bachelor's thesis, 2019, refactored 2021).

Language: Java - Size: 18.3 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

BlueBrain/TMD 📦

A python package for the topological analysis of neurons.

Language: Python - Size: 462 KB - Last synced at: about 21 hours ago - Pushed at: 6 months ago - Stars: 28 - Forks: 23

DanuserLab/u-shape3D

Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.

Language: MATLAB - Size: 107 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 29 - Forks: 6

DanuserLab/u-signal3D

The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cell surface, enabling comparison and machine-learning of signaling across morphologically diverse cell populations.

Language: MATLAB - Size: 100 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 10 - Forks: 2

StructuralNeurobiologyLab/SyConn

Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

Language: Python - Size: 256 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 41 - Forks: 9

SandraSSB/MACROglia_cell-morphology-analysis

ImageJ macro for morphological analysis

Language: ImageJ Macro - Size: 28.9 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

osharma08/ovarian_cancer_morphology

Ovarian cancer cell line in coculture with fibroblasts cell line: morphology analysis

Language: Jupyter Notebook - Size: 53.4 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

hugojal/Applying-Topological-Data-Analysis-to-Alzheimer-s-Disease-Diagnosis-from-MRI

Hello! We are an international group of students researching deep learning applications for Alzheimer's disease. We aim to introduce a better model for AD diagnosis. Our names are Hugo Jal Hernández, Ravi Shah, Parth Parik.

Language: Python - Size: 1.14 MB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

hansenjn/MotiQ

A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

Language: Java - Size: 7.93 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0

super16/telegram-pymorphy-bot

Linguistics morphological analysis for russian words in Telegram

Language: Python - Size: 62.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

fiorin7/words-flask

Prototype of a digital Latin-Bulgarian dictionary with morphological analysis.

Language: CSS - Size: 862 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

syntpump/declensor

Library for word declension

Language: Python - Size: 38.1 KB - Last synced at: 22 days ago - Pushed at: over 6 years ago - Stars: 5 - Forks: 1

Rj7/NMT-for-morphologically-rich-languages

Neural Machine Translation for Morphologically rich languages - Report

Language: TeX - Size: 1.71 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

EvidentSolutions/elasticsearch-analysis-raudikko

Finnish language analysis for Elasticsearch using Raudikko

Language: Java - Size: 114 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 6

EvidentSolutions/raudikko

Morphological analysis of Finnish language for Java

Language: Java - Size: 3.91 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 2

aksel-blaise/bottle.traj

Patterns of shape change in Caddo bottle morphology.

Language: HTML - Size: 31 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

aksel-blaise/perdiz 📦

Analysis of Perdiz arrow point morphology reveals differences in shape as a function of time, raw material, and burial context.

Language: HTML - Size: 91.9 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

zoobereq/genusidator

A Rule-Based System to Explain Grammatical Gender Assignment in German Nouns

Language: Python - Size: 6.32 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

Akshayanti/Masters-Thesis-CUNI-2020 📦

Experimental Data and Annotations for Master's Thesis as submitted to CUNI in July 2020

Language: Python - Size: 441 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

Tiendil/morphologic

morphological analysis tool: https://tiendil.github.io/morphologic/

Language: Vue - Size: 2.49 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 1

Orthogonal-Research-Lab/Developmental-Incongruities-and-Heterochrony

Language: Jupyter Notebook - Size: 5.61 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 2

Related Keywords
morphology-analysis 26 image-analysis 6 morphology 6 python 3 matlab 2 microglia 2 morphology-metrics 2 caddo 2 archaeology 2 voikko 2 cell-biology 2 drug-discovery 2 finnish 2 image-processing 2 alzheimer-disease-prediction 2 neurons 2 trajectory-reconstruction 1 mongodb 1 pymorphy2 1 python-telegram-bot 1 python3 1 telegram-bot 1 language-processing 1 bulgarian 1 dictionary 1 grammar 1 declension-model 1 declension 1 latin 1 flask 1 alzheimers-disease 1 deep-learning 1 machine-learning 1 neuralnetwork 1 neuroscience 1 rnn 1 tda 1 topological-data-algorithms 1 cell-migration 1 fluorescence-microscopy-analysis 1 fluorescence-microscopy-imaging 1 image-analysis-workflows 1 imagej-plugins 1 microglial-morphology 1 microglial-motility 1 morphology-reconstruction 1 motility 1 motility-analysis 1 timelapse-image 1 docker 1 linguistics 1 wordnet 1 annotations 1 cuni 1 error-mining 1 inconsistencies 1 master-thesis 1 masters-thesis 1 pos-annotation-consistency 1 syntax 1 thesis 1 thesis-project 1 treebanks 1 universal-dependencies 1 knowledge-base 1 solution-architecture 1 solutions-engineering 1 developmental-biology 1 phenotype 1 shape-form 1 theoretical-biology 1 nlp 1 ukrainian 1 neural-network 1 nmt 1 translation 1 elasticsearch 1 finnish-language-analysis 1 raudikko 1 ceramic 1 lithics 1 stone-tools 1 german 1 german-language 1 german-translation 1 grammatical-gender 1 grammatical-genders 1 language-learning 1 semantics 1 sla 1 taxonomy 1 3d-image-segmentation 1 3d-motion-tracking 1 3d-scale-invariant-feature-transform-flow 1 acute-myeloid-leukemia 1 anticipate-drug-resistance 1 ara-c-cytarabine 1 glioblastoma-drug-discovery 1 image-segmentation 1 multiple-myeloma 1