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GitHub topics: protein-fitness-prediction

J-SNACKKB/FLIP

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

Language: Jupyter Notebook - Size: 595 MB - Last synced at: 7 days ago - Pushed at: 10 months ago - Stars: 101 - Forks: 16

microsoft/protein-uq

Benchmarking uncertainty quantification methods on proteins.

Language: Jupyter Notebook - Size: 131 MB - Last synced at: 6 days ago - Pushed at: 6 months ago - Stars: 21 - Forks: 4

niklases/PyPEF

PyPEF – Pythonic Protein Engineering Framework

Language: Python - Size: 269 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 14 - Forks: 2

Protein-Engineering-Framework/PyPEF

PyPEF – Pythonic Protein Engineering Framework

Language: Python - Size: 148 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 24 - Forks: 3

lucidrains/tranception-pytorch

Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction

Language: Python - Size: 206 KB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 32 - Forks: 1

Related Keywords
protein-fitness-prediction 5 protein-sequences 4 regression 2 python3 2 protein-engineering 2 machine-learning 2 in-silico 2 protein-function-prediction 2 protein-design 2 protein 2 uncertainty-estimation 1 uncertainty-neural-networks 1 uncertainty-quantification 1 active-learning 1 representation-learning 1 artificial-intelligence 1 attention-mechanism 1 deep-learning 1 retrieval 1 transformers 1