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GitHub topics: streptococcus-pneumoniae

GlobalPneumoSeq/gps-pipeline

Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)

Language: Nextflow - Size: 1.42 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 12 - Forks: 4

FemkeAhlers/Pneumococcal_PCR

Code for an upcoming paper on pneumococcal PCR-based diagnostics.

Language: R - Size: 92.8 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

FemkeAhlers/Pneumococcal_LAMP

Code accompying an upcoming publication on the development of a pneumococcal LAMP assay.

Language: R - Size: 43 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Related Keywords
streptococcus-pneumoniae 3 bacterial-genomes 2 diagnostics 2 in-silico 2 in-vitro 2 infectious-disease 2 limit-of-detection 2 molecular-diagnostics 2 sensitivity 2 specificity 2 fastq 1 genomics 1 insilico 1 nextflow 1 pipeline 1 qpcr-analysis 1