biogeography | Topic | Ecosyste.ms: Repos

Topic: "biogeography"

earth-chris/elapid

Species distribution modeling tools, including a python implementation of Maxent

Language: Python - Size: 6.39 MB - Last synced at: about 7 hours ago - Pushed at: 6 months ago - Stars: 63 - Forks: 11

EcoJulia/SpatialEcology.jl

Julia framework for spatial ecology - data types and utilities

Language: Julia - Size: 9.54 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 57 - Forks: 7

adamlilith/enmSdm 📦

Faster, better, smarter ecological niche modeling and species distribution modeling

Language: R - Size: 502 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 51 - Forks: 20

adamlilith/enmSdmX

Tools for Modeling Niches and Distributions of Species

Language: R - Size: 11 MB - Last synced at: 5 days ago - Pushed at: 19 days ago - Stars: 26 - Forks: 3

chenyangkang/stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

Language: Python - Size: 438 MB - Last synced at: 1 day ago - Pushed at: 5 days ago - Stars: 23 - Forks: 1

PoisotLab/SpeciesDistributionToolkit.jl

Work with species distributions in Julia

Language: Julia - Size: 277 MB - Last synced at: 6 days ago - Pushed at: 18 days ago - Stars: 19 - Forks: 3

PoisotLab/GBIF.jl 📦

Functions and types to access GBIF data from Julia

Language: Julia - Size: 2.26 MB - Last synced at: 4 months ago - Pushed at: over 2 years ago - Stars: 19 - Forks: 4

manaakiwhenua/virtualNicheR

virtualNicheR: creating virtual fundamental and realised niches

Language: R - Size: 2.02 MB - Last synced at: 3 days ago - Pushed at: over 4 years ago - Stars: 14 - Forks: 0

tahiri-lab/aPhyloGeo

aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.

Language: Python - Size: 79 MB - Last synced at: 5 days ago - Pushed at: 24 days ago - Stars: 12 - Forks: 9

BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.

Language: R - Size: 205 MB - Last synced at: 2 days ago - Pushed at: 5 months ago - Stars: 12 - Forks: 5

V-Z/course-r-mol-data

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

Language: TeX - Size: 1.46 GB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 11 - Forks: 4

GlobalEcologyLab/poems

Pattern-oriented ensemble modelling and simulation (with spatially explicit populations)

Language: R - Size: 15.6 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 10 - Forks: 2

PEM-Humboldt/biomodelos-website

BioModelos web application v 2

Language: HTML - Size: 82 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 2

claraqin/neonMicrobe

Processing NEON soil microbe marker gene sequence data into ASV tables.

Language: R - Size: 958 MB - Last synced at: 8 months ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 4

bioRgeo/bioregion

:package: An R package compiling all steps of a bioregionalization workflow

Language: R - Size: 243 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 0

nmatzke/PhyBEARS.jl

Phylogenetic biogeography SSE models for large state spaces

Language: Julia - Size: 318 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 8 - Forks: 0

mingkaijiang/biome_specific_predictability

Calculating temperature and precipitation predictability at the global scale

Language: R - Size: 425 KB - Last synced at: over 1 year ago - Pushed at: over 8 years ago - Stars: 8 - Forks: 5

Pakillo/FloraIberica

An R package to get taxonomic and distribution data for the ~6500 vascular plants present in the Iberian Peninsula and Balearic Islands

Language: R - Size: 14.8 MB - Last synced at: 7 days ago - Pushed at: about 2 years ago - Stars: 7 - Forks: 0

FMestre1/MetaLandSim

Metapopulations Persistence and Range Expansion Simulation

Language: AGS Script - Size: 24.4 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 1

walidbosso/C_TSPBBO

Implementation of the Biogeography-Based Optimization (BBO) algorithm to solve the Traveling Salesman Problem (TSP)

Language: C - Size: 62.5 KB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

stanford-ccb/ccb-id 📦

The Center for Conservation Biology's imaging-spectroscopy-based species classification approach.

Language: Python - Size: 7.67 MB - Last synced at: 8 days ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 2

nnbuainain/get_confidence_interval_from_treePL

get confidence interval from phylogenetic trees with treePL

Language: Python - Size: 38.5 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 2

mkarlik93/MetaPlastHunter

Language: Python - Size: 966 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 0

m-orton/Arctic-Biogeographical-Analysis-Pipeline

Arctic Community Similarity using DNA Barcoding Data

Language: R - Size: 23.4 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 0

samanghs/habitat

habitat: An R Package for Analyzing and Comparing Habitat Changes

Language: R - Size: 906 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 2 - Forks: 0

tdwg/geoschemes

A set of geographic areas (named entities and boundaries) that provides a mapping between natural biogeographic and common administrative entities.

Size: 84.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 2

hjsimpso/fungarium

An R package for enabling the use of fungarium collection data in comprehensive trait analyses.

Language: R - Size: 22.4 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

ccsosa/Garcia-Merchan-et-al-Chapter-2020

This repository is a supplementary information repository from García-Merchán et al... 2020 publication.

Language: R - Size: 1.01 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

camayal/treetom

Develop repo for TreeToM

Language: HTML - Size: 273 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

DataDrivenEcologicalSynthesis/VirtualBiogeography

Analyzing the biogeographical accuracy of 🐠Finding Nemo🐡

Language: R - Size: 742 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

phytomosaic/vuln

Niche-based vulnerability of species and communities.

Language: R - Size: 47.2 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 2 - Forks: 1

rBatt/spatialDiversity

Spatial patterns in biodiversity change

Language: R - Size: 23 MB - Last synced at: about 1 year ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 1

tahiri-lab/py_madaclim

A simple Python API to interact with the Madaclim database

Language: Python - Size: 172 MB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 1

ds-modules/IB-105-ESPM-125-FA21

UC Berkeley IB 105 / ESPM-125 Fall 2021

Language: Jupyter Notebook - Size: 6.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1

PAICEcode/PAICE

Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. 2022 (doi:10.1111/jbi.14341).

Language: R - Size: 4.02 MB - Last synced at: about 16 hours ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

nicole-a-moore/living-up-to-thermal-potentials

Data, code & figures used to assess global patterns of potential thermal niche filling

Language: R - Size: 728 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

bhartidk/centipede_macrogenetics

This repository contains R scripts to reproduce results and figures from our macrogenetics study where we investigate the species traits and biogeographic variables correlated with intra-specific genetic diversity in centipede species.

Language: R - Size: 33.7 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

pinskylab/ClimateAndMSP

Test the benefits and costs of proactively preparing for climate change-driven species shifts.

Language: R - Size: 1.92 GB - Last synced at: 12 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

JennaMcCullough/Corvides-SSE

RevBayes code used in McCullough et al. 2022 Systematic Biology

Language: R - Size: 13.4 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

OdilonVieira/chamaeza_distribution

Data used in: "Estudo da distribuição do gênero chamaeza no estado do Rio de Janeiro"

Language: R - Size: 29.3 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

mlandis/biogeo_silversword

Data and scripts for "Dating the Hawaiian silversword radiation" project

Size: 3.48 MB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 0

cfnnmcg/panbiotracks

Panbiotracks is a fast, modern and precise tool to do panbiogeography's track analysis.

Language: Python - Size: 488 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

FriedaRosa/StaticPatterns_git

Project version 2.0 - after review. In prep for resubmission.

Language: HTML - Size: 83.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

IrisRizos/Unassigned_Protists_SSN

Language: Python - Size: 440 MB - Last synced at: 2 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 1

armenenikolopov/HoldridgeLifeZoneMap

Produces a 1-km resolution global bioclimatic map using the Holdridge Life Zone system

Language: MATLAB - Size: 32.2 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

qiaohj/ees_3d

Language: C++ - Size: 4.55 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

agimenezromero/Coral-Reef-Analysis

Analysis of the Allen Coral Atlas database on shallow-water tropical reefs worldwide

Language: Python - Size: 1.22 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

nmatzke/PhyloBits.jl

Phylogenetic tree tables and other phylogenetic utilities. (Functions include: prt(tr) and other utilities. Also includes the PhyloNetworks tree object/reader/writer, with minimal dependencies.)

Language: Julia - Size: 181 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

jezierskim/clutch_ornithology

Repository for 'Birds that nest exclusively on islands have smaller clutches'. Ornithology 2024.

Language: R - Size: 460 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

pelow22/sig_biogeografia

Biogeografia e SIG: manual de aulas práticas (eBook + curso)

Language: HTML - Size: 68.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

lukaseamus/CSP

Data and R code accompanying article 10.1111/gcb.16299 in Global Change Biology

Language: R - Size: 19.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

LPDagallier/Monodoreae_macroevolution

Macroevolutionary analyses of the Monodoreae tribe (Annonaceae) :dna::deciduous_tree::earth_africa:

Language: R - Size: 115 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mbutler808/Hill_et_al_2023_IOB_Biogeography_Analysis

Code and data to reproduce all analyses and figures in Hill et al 2023

Language: TeX - Size: 33.9 MB - Last synced at: 2 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

lukaseamus/Laminaria-pigments

Data and R code accompanying article 10.3354/meps13886 in Marine Ecology Progress Series.

Language: R - Size: 3.81 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

MoralesCastilla/moralescastilla.github.io

https://moralescastilla.github.io/

Language: CSS - Size: 29.1 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

zhulabgroup/qin-2021-ecosphere 📦

neonMicrobe: Processing NEON soil microbe marker gene sequence data into ASV tables, duplicated from https://github.com/claraqin/neonMicrobe

Language: HTML - Size: 958 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

jtmiller28/Bees-and-Angiosperms-Interactions

A research oriented respository for exploring bee & flowering plant co-occurrence, interactions, and relational biodiversity

Language: R - Size: 208 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

PoisotLab/SimpleSDMDatasets.jl

Language: Julia - Size: 236 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

kcbrock/kcbrockresearch.com

Kelsey Brock's Personal Website; visit kcbrockresearch.com

Language: CSS - Size: 3.56 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

rvanmazijk/Cape-vs-SWA

Open access repository for (some) data-sets, reproducible analyses, conference slides and manuscript for a publication based on my BSc Hons project (in press in Journal of Biogeography).

Language: R - Size: 945 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

schefferslab/Basham_et_al_2021

Repository for code and data for Basham et al 2022 (Oceologia, https://doi.org/10.1007/s00442-022-05108-9)

Size: 63.5 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

hjsimpso/fungarium_book

A guide to using fungarium for comprehensive analyses of ecological traits in fungi.

Language: TeX - Size: 10.2 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

cjabradshaw/BritishBirdsRangeChange

Predictors of contraction and expansion of area of occupancy for British birds

Language: R - Size: 166 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

sagesteppe/Floristic-Provinces-of-the-North-American-Holarctic

These data were created by grafting several existing shapefiles, and creating new ones in QGIS to fill in the voids. These data have an estimated accuracy of +/- 20 km. Given the fuzziness of a region I consider this acceptable for all pedagolical purposes, and most academic. Clearly points near the boundaries of these should be evaluated per user discretion. The author is very open to collaboration and updates of this product!!!

Language: HTML - Size: 126 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

smkalami/ypea113-biogeography-based-optimization

Biogeography-Based Optimization (BBO) in MATLAB

Language: MATLAB - Size: 3.91 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

pebgroup/pos_phylo_biogeo

Species-level phylogeny and biogeography of the POS-clade (Arecaceae) with special focus on the disjunct distribution of Orania, using the target capture loci of Heyduk et al. 2016 (doi: 10.1111/bij.12551) • Second part: testing the 'time-for-speciation' hypothesis in Madagascan palms

Language: R - Size: 21.4 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1