Topic: "ecology"
vegandevs/vegan
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
Language: R - Size: 501 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 485 - Forks: 100
datacarpentry/R-ecology-lesson
Data Analysis and Visualization in R for Ecologists
Language: R - Size: 663 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 321 - Forks: 508
VIAME/VIAME
Video and Image Analytics for Multiple Environments
Language: Python - Size: 49.8 MB - Last synced at: about 24 hours ago - Pushed at: 1 day ago - Stars: 302 - Forks: 83
cartesapp/cartes
L'appli Web de cartes grand public
Language: TypeScript - Size: 289 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 277 - Forks: 32
pbs-assess/sdmTMB
:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB
Language: R - Size: 369 MB - Last synced at: 3 days ago - Pushed at: 9 days ago - Stars: 213 - Forks: 27
datacarpentry/python-ecology-lesson
Data Analysis and Visualization in Python for Ecologists
Language: Jupyter Notebook - Size: 25.9 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 168 - Forks: 311
agentmorris/MegaDetector
MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.
Language: Jupyter Notebook - Size: 186 MB - Last synced at: about 5 hours ago - Pushed at: about 15 hours ago - Stars: 160 - Forks: 32
ec0lint/ec0lint
Create sustainable digital environment with ec0lint
Language: JavaScript - Size: 34.1 MB - Last synced at: about 1 hour ago - Pushed at: over 1 year ago - Stars: 159 - Forks: 5
carbonalyser/Carbonalyser
The add-on "Carbonalyser" allows to visualize the electricity consumption and greenhouse gases (GHG) emissions that your Internet browsing leads to.
Language: JavaScript - Size: 138 KB - Last synced at: 1 day ago - Pushed at: over 2 years ago - Stars: 155 - Forks: 36
EnvironmentOntology/envo
A community-driven ontology for the representation of environments
Language: Makefile - Size: 107 MB - Last synced at: about 24 hours ago - Pushed at: 12 days ago - Stars: 147 - Forks: 54
PetervanLunteren/AddaxAI
Simplify camera trap image analysis with AI species recognition models based around the MegaDetector model
Language: Python - Size: 123 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 138 - Forks: 19
globalbioticinteractions/globalbioticinteractions
Global Biotic Interactions provides access to existing species interaction datasets
Language: Java - Size: 155 MB - Last synced at: 1 day ago - Pushed at: 3 days ago - Stars: 131 - Forks: 16
drivendataorg/zamba
A Python package for identifying hundreds of kinds of animals, training custom models, and estimating distance from camera trap videos and images
Language: Python - Size: 83.4 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 130 - Forks: 31
gbif/pygbif
GBIF Python client
Language: Python - Size: 20.5 MB - Last synced at: about 23 hours ago - Pushed at: 6 months ago - Stars: 129 - Forks: 34
jeffreyevans/spatialEco
R package for spatial analysis and modelling of ecological systems
Language: R - Size: 15.7 MB - Last synced at: 1 day ago - Pushed at: 3 months ago - Stars: 110 - Forks: 30
WildlifeDatasets/wildlife-datasets
WildlifeDatasets: An open-source toolkit for animal re-identification
Language: Jupyter Notebook - Size: 233 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 106 - Forks: 11
EOA-team/eodal
Earth Observation Data Analysis Library
Language: Python - Size: 28.4 MB - Last synced at: 24 days ago - Pushed at: 2 months ago - Stars: 96 - Forks: 16
mooch443/trex
TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields.
Language: C++ - Size: 199 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 91 - Forks: 9
NEONScience/NEON-Data-Skills
Self-paced tutorials that review key data literacy concepts and data analysis skills. Published materials can be found at:
Language: HTML - Size: 888 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 77 - Forks: 89
PoisotLab/EcologicalNetworks.jl 📦
Everything you've never dreamed about measuring on ecological networks.
Language: Julia - Size: 90.9 MB - Last synced at: about 6 hours ago - Pushed at: almost 2 years ago - Stars: 69 - Forks: 20
cnumr/ecoCode 📦
Reduce the environmental footprint of your software applications with this cutting-edge sonarQube plugin
Language: Groovy - Size: 3.48 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 63 - Forks: 48
MarosMacko/CarbonFootprintCalculator
Calculate your carbon footprint, and find out how much you have to do to eliminate it!
Language: HTML - Size: 49.8 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 63 - Forks: 26
zoonproject/zoon
The zoon R package
Language: HTML - Size: 10.3 MB - Last synced at: 27 days ago - Pushed at: over 5 years ago - Stars: 61 - Forks: 13
Circuitscape/Omniscape.jl
Functions to compute omnidirectional landscape connectivity using circuit theory and the Omniscape algorithm.
Language: Julia - Size: 1.03 GB - Last synced at: about 6 hours ago - Pushed at: about 1 year ago - Stars: 60 - Forks: 13
patrickcgray/deep_learning_ecology
Educational Resources on Neural Networks for Ecology and Remote Sensing
Language: Jupyter Notebook - Size: 2.81 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 60 - Forks: 23
paternogbc/livro_aer
Este livro oferece uma introdução compreensiva aos métodos estatísticos mais utilizados em Ecologia.
Language: HTML - Size: 327 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 58 - Forks: 23
EcoJulia/SpatialEcology.jl
Julia framework for spatial ecology - data types and utilities
Language: Julia - Size: 9.54 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 57 - Forks: 7
CameronBodine/PINGMapper
Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
Language: Python - Size: 410 MB - Last synced at: 23 days ago - Pushed at: 26 days ago - Stars: 53 - Forks: 6
traitecoevo/plant
Trait-Driven Models of Ecology and Evolution :evergreen_tree:
Language: C++ - Size: 24.5 MB - Last synced at: about 24 hours ago - Pushed at: 3 months ago - Stars: 53 - Forks: 20
iosefa/PyForestScan
A python package for calculating forest structural metrics from airborne point clouds.
Language: Python - Size: 247 MB - Last synced at: about 6 hours ago - Pushed at: 10 days ago - Stars: 52 - Forks: 4
datacarpentry/sql-ecology-lesson
Data Management with SQL for Ecologists
Size: 12.6 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 51 - Forks: 148
seananderson/glmmfields
R package for Bayesian spatial and spatiotemporal GLMMs with possible extremes
Language: R - Size: 6.14 MB - Last synced at: 16 days ago - Pushed at: over 1 year ago - Stars: 51 - Forks: 11
lter/lterdatasampler
LTER data samples to teach environmental data science
Language: R - Size: 44.9 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 51 - Forks: 7
cboettig/noise-phenomena
:notebook: Ecology Letters review paper: Noise-driven phenomena in population biology
Language: TeX - Size: 5.52 MB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 51 - Forks: 9
EcoJulia/Microbiome.jl
For analysis of microbiome and microbial community data
Language: Julia - Size: 2.47 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 48 - Forks: 10
NCEAS/metacatui
MetacatUI: A client-side web interface for DataONE data repositories
Language: JavaScript - Size: 349 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 44 - Forks: 27
EcoJulia/EcoSISTEM.jl
Julia package for ecosystem simulation
Language: Julia - Size: 30.6 MB - Last synced at: 6 days ago - Pushed at: about 2 months ago - Stars: 44 - Forks: 8
johnbaums/rmaxent
Tools for working with Maxent in R
Language: R - Size: 875 KB - Last synced at: 12 months ago - Pushed at: almost 5 years ago - Stars: 44 - Forks: 7
BLayman/Artificial-Life-Simulator
An ecologically inspired multi-agent system. Agents are designed with neural network based decision making, and complex resource requirements.
Language: C# - Size: 44.3 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 44 - Forks: 4
bmaitner/RBIEN
Tools for accessing the Botanical Information and Ecology Network (BIEN) database
Language: C++ - Size: 86.1 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 43 - Forks: 10
datacarpentry/spreadsheet-ecology-lesson
Data Organization in Spreadsheets for Ecologists
Size: 16.4 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 41 - Forks: 142
bencevans/camtrap-detector
Detect Animals, Humans and Vehicles in Camera Trap Imagery. Powered by MegaDetector v5.
Language: Rust - Size: 13.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 39 - Forks: 1
AquaticEcoDynamics/GLM
Code for the General Lake Model
Language: C - Size: 57.6 MB - Last synced at: 1 day ago - Pushed at: 3 days ago - Stars: 36 - Forks: 33
valentinitnelav/plotbiomes
R package for plotting Whittaker biomes with ggplot2
Language: R - Size: 7.54 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 35 - Forks: 10
AndrewLJackson/SIBER
ellipse and convex hull fitting package for stable isotope data
Language: HTML - Size: 5.41 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 35 - Forks: 14
gaelforget/MITgcm.jl
Julia interface to MITgcm
Language: Julia - Size: 67.1 MB - Last synced at: 3 days ago - Pushed at: 8 days ago - Stars: 34 - Forks: 9
EcoJulia/Diversity.jl
Julia package for diversity measurement
Language: Julia - Size: 2.42 MB - Last synced at: 4 days ago - Pushed at: 6 months ago - Stars: 33 - Forks: 9
forestgeo/fgeo
[Meta R-package on CRAN] Analyse forest diversity and dynamics
Language: R - Size: 22.4 MB - Last synced at: 7 days ago - Pushed at: over 5 years ago - Stars: 33 - Forks: 12
sdtaylor/pyPhenology
Plant phenology models in python with a scikit-learn inspired API
Language: Python - Size: 1.87 MB - Last synced at: 8 days ago - Pushed at: almost 2 years ago - Stars: 32 - Forks: 12
EcologicalTraitData/traitdataform
A package to manage and compile functional trait data into predefined templates
Language: R - Size: 2.12 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 32 - Forks: 9
AdamWilsonLabEDU/SpatialDataScience 📦
Introduction to Data Science with R
Language: HTML - Size: 643 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 31 - Forks: 31
mdfirman/CityNet
A neural network classifier for urban soundscapes
Language: Jupyter Notebook - Size: 54.2 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 30 - Forks: 5
project-gen3sis/R-package
Repository of the R-packageGen3sis
Language: R - Size: 58.4 MB - Last synced at: 20 days ago - Pushed at: over 1 year ago - Stars: 30 - Forks: 9
mooreryan/iroki
Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.
Language: HTML - Size: 15.6 MB - Last synced at: 10 days ago - Pushed at: about 2 years ago - Stars: 30 - Forks: 1
trashbirdecology/bbsAssistant
An R package for downloading and handling data and information from the North American Breeding Bird Survey.
Language: R - Size: 143 MB - Last synced at: about 6 hours ago - Pushed at: almost 2 years ago - Stars: 29 - Forks: 13
mbjoseph/neuralecology
Code for the paper "Neural hierarchical models of ecological populations"
Language: Jupyter Notebook - Size: 13.3 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 28 - Forks: 10
PoisotLab/BioEnergeticFoodWebs.jl
A unified interface for simulations of the Bio-Energetic model on food webs
Language: Julia - Size: 2.57 MB - Last synced at: 3 months ago - Pushed at: about 3 years ago - Stars: 28 - Forks: 14
RRemelgado/rsMove
Remote Sensing for Movement Ecology
Language: R - Size: 33.2 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 28 - Forks: 8
datacarpentry/OpenRefine-ecology-lesson
Data Cleaning with OpenRefine for Ecologists
Size: 19.2 MB - Last synced at: 1 day ago - Pushed at: 6 days ago - Stars: 27 - Forks: 113
Circuitscape/Circuitscape.py 📦
Circuitscape uses electronic circuit theory to solve problems in landscape ecology.
Language: Python - Size: 10.6 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 27 - Forks: 17
geoinquiets/rafagas
Daily geospatial links curated by Raf Roset
Language: Python - Size: 13.3 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 26 - Forks: 8
TGuillerme/dispRity
Measuring disparity with R
Language: HTML - Size: 104 MB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 26 - Forks: 12
yuuretsu/evolution-of-artificial-life
🧬 Agent-based artificial life evolution simulator.
Language: TypeScript - Size: 16.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 26 - Forks: 2
josafatburmeister/BirdSongIdentification
Fully automated machine learning pipeline for bird sound recognition
Language: Jupyter Notebook - Size: 3.77 MB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 25 - Forks: 4
Ecological-Complexity-Lab/infomap_ecology_package
Package with functions to handle network data and run Infomap, inspired by ecological networks
Language: R - Size: 14.7 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 24 - Forks: 2
weecology/forecasting-course
Morgan Ernest & Ethan White's Ecological Forecasting & Dynamics Course
Language: HTML - Size: 3.96 MB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 24 - Forks: 11
earth-chris/earthlib-legacy
Spectral endmembers and unmixing tools for satellite land cover mapping.
Language: Jupyter Notebook - Size: 129 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 24 - Forks: 3
gottacatchenall/MetacommunityDynamics.jl
population and community dynamics on spatial graphs, in julia.
Language: Julia - Size: 74.2 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 23 - Forks: 1
ecomontec/ecoSound-web Fork of nperezg/biosounds
Web application for ecoacoustics to manage, navigate, visualise, annotate, and analyse soundscape recordings.
Language: JavaScript - Size: 22.6 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 23 - Forks: 4
MoBiodiv/mobr
Tools for analyzing changes in diversity across scales
Language: R - Size: 6.54 MB - Last synced at: about 24 hours ago - Pushed at: 2 months ago - Stars: 23 - Forks: 18
SORTEE-Github-Hackathon/manuscript
This repository implements an automated system to write our collaborative manuscript, while tracking changes and contributions.
Language: HTML - Size: 55.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 23 - Forks: 17
Restor-Foundation/tcd
Restor's ML pipeline for tree crown mapping in aerial images
Language: Python - Size: 30.1 MB - Last synced at: 7 days ago - Pushed at: 24 days ago - Stars: 22 - Forks: 2
femiguez/nlraa
Nonlinear Regression for Agricultural Applications
Language: R - Size: 6.57 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 22 - Forks: 2
mbjoseph/scr-stan
Spatial capture-recapture models in Stan
Language: Stan - Size: 261 KB - Last synced at: about 1 month ago - Pushed at: about 5 years ago - Stars: 22 - Forks: 0
AtlasOfLivingAustralia/ala-labs
ALA Labs is a website of public resources and articles from the Atlas of Living Australia's Science and Decision Support team
Language: HTML - Size: 2.06 GB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 21 - Forks: 5
chenyangkang/stemflow
A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)
Language: Python - Size: 441 MB - Last synced at: 7 days ago - Pushed at: 18 days ago - Stars: 21 - Forks: 1
SnailBones/CellForest
A cellular-automaton forest simulation set to live data-driven music.
Language: GDScript - Size: 99.8 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 21 - Forks: 1
WHOIGit/FishDetector 📦
🐟🔍 Detect fish in images and video
Language: Python - Size: 66.4 KB - Last synced at: 8 days ago - Pushed at: almost 3 years ago - Stars: 21 - Forks: 4
UofTCoders/rcourse
Reproducible Quantitative Methods for EEB
Language: TeX - Size: 68.5 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 21 - Forks: 33
citiususc/voila
Variational Inference for Langevin Equations
Language: R - Size: 1.26 MB - Last synced at: about 2 months ago - Pushed at: over 7 years ago - Stars: 21 - Forks: 3
RolnickLab/antenna
An online toolset to manage and analyze data collected from insect camera traps for research and conservation efforts.
Language: Python - Size: 6.05 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 20 - Forks: 4
datacarpentry/ecology-workshop
Ecology Workshop Overview
Language: R - Size: 7.46 MB - Last synced at: 8 days ago - Pushed at: 13 days ago - Stars: 20 - Forks: 34
alexander-g/INBD
Iterative Next Boundary Detection for Instance Segmentation of Tree Rings in Microscopy Images of Shrub Cross Sections
Language: Python - Size: 346 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 20 - Forks: 3
cklausme/EcoEvo
EcoEvo Mathematica Package
Language: Mathematica - Size: 2.78 GB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 19 - Forks: 5
Cognitive-AI-Systems/WaRP
WaRP dataset includes labeled images of an industrial conveyor.
Language: Shell - Size: 776 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 19 - Forks: 3
PoisotLab/GBIF.jl 📦
Functions and types to access GBIF data from Julia
Language: Julia - Size: 2.26 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 19 - Forks: 4
kabachuha/MinecraftEcologyMod
Mod, that adds pollution and climate changing system to Minecraft
Language: Java - Size: 4.77 MB - Last synced at: about 2 months ago - Pushed at: about 7 years ago - Stars: 19 - Forks: 10
juraj-hrivnak/Underdog
A complete overhaul of Minecraft's survival mode with an emphasis on realism and ecology.
Language: Groovy - Size: 339 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 18 - Forks: 4
boyanangelov/sdmbench
Benchmarking Species Distribution Models
Language: R - Size: 1.18 MB - Last synced at: 8 days ago - Pushed at: over 4 years ago - Stars: 18 - Forks: 2
sentialx/ecobrowser 📦
Save the world by using Eco Browser
Language: JavaScript - Size: 77.1 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 18 - Forks: 0
adrientaudiere/MiscMetabar
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
Language: R - Size: 334 MB - Last synced at: about 6 hours ago - Pushed at: 10 days ago - Stars: 17 - Forks: 0
PoisotLab/SpeciesDistributionToolkit.jl
Work with species distributions in Julia
Language: Julia - Size: 218 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 17 - Forks: 2
AquaticEcoDynamics/libaed2
Code for the AED2 water quality / ecology library
Language: Fortran - Size: 824 KB - Last synced at: 1 day ago - Pushed at: 2 months ago - Stars: 17 - Forks: 17
SPATIAL-Lab/assignR
R package for geographic assignment
Language: R - Size: 52 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 17 - Forks: 4
Rekyt/funrar
:package: R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)
Language: R - Size: 5.37 MB - Last synced at: about 24 hours ago - Pushed at: about 1 year ago - Stars: 17 - Forks: 1
GeopJr/CO2
A GitHub action that notifies you about your website's carbon emissions and gives you some fun facts about it
Language: JavaScript - Size: 44.9 KB - Last synced at: about 16 hours ago - Pushed at: about 2 years ago - Stars: 17 - Forks: 0
Suburbanno/Ecoleta
♻️ Aplicação web para coleta de resíduos de forma eficiente.
Language: CSS - Size: 735 KB - Last synced at: 9 days ago - Pushed at: over 2 years ago - Stars: 17 - Forks: 6
jffourmond/ecologit 📦
Bonnes pratiques écologiques
Size: 180 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 17 - Forks: 1
traitecoevo/austraits.build
Source for AusTraits
Language: R - Size: 96.1 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 16 - Forks: 3
spatial-ews/spatialwarnings
An R package to compute spatial early-warning signals of ecosystem degradation
Language: R - Size: 20.2 MB - Last synced at: about 24 hours ago - Pushed at: 11 days ago - Stars: 16 - Forks: 4
