Topic: "bulk-sequencing"
ZJUFanLab/bulk2space
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
Language: Jupyter Notebook - Size: 12.1 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 115 - Forks: 23
secrierlab/tumourMassDormancy
This repository contains the code developed for the analysis of tumour mass dormancy, immunological and angiogenic dormancy across cancers from the Cancer Genome Atlas (TCGA).
Language: R - Size: 189 MB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 1
algo-cancer/DETOPT
DETOPT is a combinatorial optimization method for DETermining Optimal Placement in Tumor progression history of SNVs from the genomic regions impacted by CNAs using multi-sample bulk DNA sequencing data
Language: Python - Size: 8.63 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
utdal/Bulk-RNA-Seq-Nextflow-Pipeline
This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene landscape in the samples.
Language: Nextflow - Size: 4.24 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
