hansenjn/CiliaQ

An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

Language: Java - Size: 20.6 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 7 - Forks: 3

melchisedech333/laser-scanning-microscopy

🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.

Language: PHP - Size: 4.39 MB - Last synced at: 3 months ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 1

lauraluebbert/confocal_z-stack_analysis

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.

Language: Jupyter Notebook - Size: 177 KB - Last synced at: 3 months ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 4

Russel88/RCon3D

3D Analysis of confocal images of microbial biofilms/communities

Language: R - Size: 12 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1

AlexSath/prodivis

A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.

Language: Python - Size: 6.12 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 0

ramonitzzz/FosCounter

Semi-automated script for detection and quantification of c-Fos cells in IHC stained confocal stack images

Language: Python - Size: 1.53 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

Edgar-La/Procesamiento_digital_de_imagenes-Microscopia_confocal

Language: MATLAB - Size: 41 MB - Last synced at: 6 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 2

SharifAmit/CalDenoise

[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.

Language: Python - Size: 79.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ramonitzzz/AbetaPlaqueDetection

Python project using Pyimagej to filter images, quantify and analyse particles in mouse brain slices.

Language: Python - Size: 8.79 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0