imagej-plugins | Topic | Ecosyste.ms: Repos

Topic: "imagej-plugins"

MontpellierRessourcesImagerie/imagej_macros_and_scripts

ImageJ macros and scripts written at the imaging facility MRI

Language: Jupyter Notebook - Size: 17.2 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 34 - Forks: 17

Biomedical-Imaging-Group/OrientationJ

ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

Language: Java - Size: 237 KB - Last synced at: 3 months ago - Pushed at: 8 months ago - Stars: 25 - Forks: 8

bonej-org/BoneJ2

Plugins for bone image analysis

Language: Java - Size: 4.09 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 23 - Forks: 12

phflot/flow_registration

Flow-Registration toolbox for 2P motion compensation

Language: MATLAB - Size: 4.76 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 21 - Forks: 2

haiderriazkhan/CANDLE-J

Collaborative Approach for eNhanced Denoising under Low-light Excitation

Language: C - Size: 38.3 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 20 - Forks: 7

UU-cellbiology/ComDet

ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

Language: Java - Size: 1.82 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 18 - Forks: 4

imagingbook/imagingbook-public

Image processing software for textbooks by W. Burger & M. Burge

Language: Java - Size: 80.5 MB - Last synced at: 28 days ago - Pushed at: about 2 years ago - Stars: 18 - Forks: 8

emx77/ASI_MTF

Imagej macro to calculate the MTF based on a knife edge measurement

Language: ImageJ Macro - Size: 924 KB - Last synced at: about 2 months ago - Pushed at: 6 months ago - Stars: 17 - Forks: 4

ekatrukha/CurveTrace

Curve tracing ImageJ plugin

Language: Java - Size: 934 KB - Last synced at: 4 months ago - Pushed at: over 4 years ago - Stars: 16 - Forks: 4

UU-cellbiology/DoM_Utrecht

Detection of Molecules plugin for ImageJ, Utrecht University

Language: Java - Size: 8.67 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 4

thorstenwagner/ij-blob

ImageJ library to detect and analyse connected components (blobs) in binary images

Language: Java - Size: 176 KB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 10 - Forks: 3

ij-plugins/ijp-DeBayer2SX

Raw Bayer pattern to color image converters

Language: Scala - Size: 3.18 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 3

UniBoDS4H/IA

Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.

Language: Java - Size: 102 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 8 - Forks: 1

Rocsg/FijiRelax

FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis

Language: Java - Size: 7.76 MB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 8 - Forks: 4

SebMilardo/ErrorLevelAnalysis

Error Level Analysis (ELA) in ImageJ

Language: Java - Size: 218 KB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 8 - Forks: 1

LauLauThom/MaskFromRois-Fiji

Fiji plugins for the creation of binary and semantic masks from ROIs in the RoiManager. Works with stacks too.

Language: Python - Size: 1.4 MB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 7 - Forks: 1

hansenjn/CiliaQ

An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

Language: Java - Size: 20.6 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 7 - Forks: 3

pmascalchi/ImageJ_AutoClickerJ

A plugin to combine power of mouse and keyboard control with image processing and analysis tools in ImageJ

Size: 51.8 KB - Last synced at: 11 months ago - Pushed at: over 7 years ago - Stars: 7 - Forks: 0

UU-cellbiology/PTU_Reader

ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files

Language: Java - Size: 220 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 6 - Forks: 1

WeisongZhao/AdaptiveMedian.imagej

v0.1.0, Adaptive Median fiter - imageJ plugin

Language: Java - Size: 1.36 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 1

dterstege/FASTMAP

ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing

Language: ImageJ Macro - Size: 33.1 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 4

jpsacha/sbt-imagej

sbt-imagej is an SBT (Simmple Build Tool) plugin that that helps with development of ImageJ plugins

Language: Scala - Size: 227 KB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 6 - Forks: 1

mrsutherland/XRM_Reader

ImageJ plugin to read xrm files.

Language: Java - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 6 - Forks: 2

hansenjn/MotiQ

A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

Language: Java - Size: 7.93 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 5 - Forks: 0

ishibaki/awesome-imagej-plugins

😎 Awesome lists about ImageJ Plugins!

Size: 21.5 KB - Last synced at: 7 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 0

joda01/evanalyzer

EVAnalyzer 1 - EV analyzing plugin for Fiji

Language: Java - Size: 317 MB - Last synced at: 25 days ago - Pushed at: 26 days ago - Stars: 4 - Forks: 0

UU-cellbiology/KymoResliceWide

ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves

Language: Java - Size: 154 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1

unal-optodigital/DHM

Digital Holographic Microscopy plugin for ImageJ. Allows realistic simulation and real-time reconstruction of single-shot holograms.

Language: Java - Size: 1.84 MB - Last synced at: 8 months ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0

thorstenwagner/ij-trajectory-classifier

This plugin segments and classify diffusion trajectories

Language: Java - Size: 47 MB - Last synced at: 1 day ago - Pushed at: over 7 years ago - Stars: 4 - Forks: 4

theresaswayne/stereology

ImageJ scripts for stereology and morphometry

Language: Python - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 4 - Forks: 0

arttumiettinen/fast-thickmap-imagej

Fast local thickness map plugin for ImageJ/Fiji

Language: Java - Size: 4.39 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0

fiji/pQCT

Fiji plugins for pQCT image analysis.

Language: Java - Size: 712 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 5

sedflix/Active-Contours-API-for-Fiji-ImageJ

This is an easy to use active contours api for Fiji(ImageJ).

Language: Java - Size: 2.93 KB - Last synced at: 28 days ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 0

Borda/ij-CMP-BIA

Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.

Language: Java - Size: 11.8 MB - Last synced at: 3 months ago - Pushed at: over 8 years ago - Stars: 2 - Forks: 10

BIOP/ijp-gabriel-graph

Language: Java - Size: 55.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

syngenta/imagej-plugins

ImageJ Plugins

Language: Java - Size: 1.19 MB - Last synced at: 4 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

nikitamahoviya/Plugins_VCell-ImageJ

This repository is for the GSoC'21 project @ NRNB to Develop GUI for ImageJ groovy script calling VCell API.

Language: Java - Size: 160 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 2

phflot/variational_aligner_IJ

ImageJ and Fiji Plugin for fast, variational 1D alignment of multichannel linescan data

Language: Java - Size: 1.3 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

sRassmann/canny3d-thresholder

ImageJ plugin to preform image binarization based on a canny edge detection in 3 dimensions

Language: Java - Size: 129 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

TCox-Lab/Collagen_Orientation

ImageJ / FIJI script to assess the orientation of collagen fibres in SHG images

Size: 21.5 KB - Last synced at: 11 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

kmader/spark-ij

Library to use ImageJ and associated plugins inside of Spark for distributed computing

Language: Scala - Size: 121 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

ComplexOrganizationOfLivingMatter/Fiji-plugins

GitHub Repository which is used as a Maven Repository

Size: 24.2 MB - Last synced at: 11 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

sedflix/EmbryoSegmentation

An ImageJ PlugIn for cell segmentation in an embryo of c.elegans

Language: Java - Size: 84 KB - Last synced at: 28 days ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 3

adines/DeepClas4BioIJ

ImageJ plugin that calls the API DeepClas4Bio

Language: Java - Size: 1.11 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

atbest/imagej-cellcounter

Modified Cell Counter plugin for ImageJ.

Language: Java - Size: 11.7 KB - Last synced at: 4 months ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

haelbouhad/imagej-plugin-uv-characterization

Language: Java - Size: 88.9 KB - Last synced at: 11 months ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 0

Syncrossus/IJCardDetector

A playing card detection plugin for ImageJ.

Language: Java - Size: 41.1 MB - Last synced at: 4 months ago - Pushed at: about 9 years ago - Stars: 1 - Forks: 1

AnhMinhDo/SMPBasedMax

Fiji Plugin for MIP-based Smooth Manifold Projection

Language: Java - Size: 4.31 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

LazzyIzzi/ImageJPlugins_CT_Tools

ImageJ UI examples calling the MuMassCalculator library

Language: Java - Size: 336 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

ijtools/imagej-plugin-template

Simple project template for creating ImageJ Plugins.

Language: Java - Size: 9.77 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

AFMiJ/AFMiJ

Plugins to read and eleborate AFM data in ImageJ

Size: 46 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

CreLox/MinIJPlugin

An ImageJ plugin (with a GUI) that allows users to select a square ROI with specified coordinates

Language: Java - Size: 26.4 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

hansenjn/CiliaQ_Editor

An ImageJ plugin to edit segmented channels in images output by CiliaQ_Preparator.

Language: Java - Size: 51.8 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

anotherche/laser-spot-track

ImageJ plugin for tracking a spot moving in a template background

Language: Java - Size: 164 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

anotherche/photobend

ImageJ plugin for tracking shape of a needle-like crystal bending as a result of photochemical reaction

Language: Java - Size: 172 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

LazzyIzzi/ImageJAddins

A class for making it easier to write imageJ plugins

Language: Java - Size: 37.1 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

h39s/VessCoopJ

ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis

Language: Java - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

hansenjn/CiliaQ_Preparator

An ImageJ plugin to prepare images for analysis using CiliaQ.

Language: Java - Size: 135 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

hansenjn/NuclQ

NuclQ - an ImageJ plugin to quantify intensity levels by distance to the nuclear membrane.

Language: Java - Size: 106 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

fmeyenhofer/NanoZoomer-J

ImageJ plugin for handling NDPI files.

Language: Java - Size: 27.3 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

werikscs/image_processing_with_imagej

This repository was created for projects related to Image Processing with ImageJ. Specifically, below are descriptions of how to create, run, and delete plugins.

Language: Java - Size: 8.78 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Ambarish-Dev/ImageJ-Image-Stitching-plugin

This is a plugin to stitch images based in ImageJ to generate combined 2D image from multiple image parts

Language: Java - Size: 6.84 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Elphel/imagej-elphel

mirror of https://git.elphel.com/Elphel/imagej-elphel

Language: Java - Size: 15.6 MB - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 6

guzikine/imagej-plugin

This is a Java plugin for the ImageJ image processing program.

Language: Java - Size: 2.07 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

sufyanshk/imagej

ImageJ macros and plugins.

Language: Rich Text Format - Size: 9.77 KB - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

connorlwilkes/STORMSim

An imageJ simulator of the STORM microscopy technique and neural network reconstruction techniques

Language: Java - Size: 5.45 MB - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

kaitsull/mFISHoverlay

Java-based ImageJ plugin for the creation of pseudocoloured mFISH overlays. Part of the Happy Hippocampus HiPlex Menu for ImageJ by Kaitlin Sullivan.

Size: 0 Bytes - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

AndySantisteban/snake-filter-imagej

Snake-filter

Language: Java - Size: 2.02 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

hansenjn/ExtractSharpestPlane_JNH

ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.

Language: Java - Size: 56.6 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

dterstege/CavalieriPointMask

ImageJ Plugin for the generation of binary point masks for area approximations

Language: ImageJ Macro - Size: 60.5 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

anotherche/imagej-ffmpeg-reader

ImageJ plugin to open video files supported by FFmpeg as virtual stacks.

Language: Java - Size: 98.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

jdebes/image-segmentation-imagej-plugin

ImageJ plugin containing a collection image segmentation algorithms.

Language: Java - Size: 24.4 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

MaximLippeveld/single-cell-image-processing

Scalable single cell image processing software built on the SciJava framework. Can be used as ImageJ plugin or standalone CLI.

Language: Java - Size: 232 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Wada-H/SheetMeshProjection

ImageJ plugin

Language: Java - Size: 21 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ijtools/Overlay_Table_Values

Simple ImageJ plugin to display results in tables into an image.

Language: Java - Size: 74.2 KB - Last synced at: 11 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Janfiderheld/ImageJ-Voronoi-PlugIn

PlugIn to create a Voronoi-Diagram from an input image in ImageJ

Language: Java - Size: 82 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

atakehiro/line-registration

reconstruct the scan image to modify the slipping to horizontal direction

Language: Java - Size: 476 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

xinDW/Easing_Roi

An ImageJ plugin that make the same ROI selection in two images.

Language: Java - Size: 716 KB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

helioalexandre/Macros_Plugins

Language: Java - Size: 357 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

adines/DeepClas4BioIJMetagenerator

Metagenerator of ImageJ plugins for the DeepClas4Bio API

Language: Java - Size: 19.5 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

adines/DeepClas4BioIJComparator

ImageJ plugin that compare different models from the DeepClas4Bio API.

Language: Java - Size: 461 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

ConradMearns/leap-sciview 📦

Adding Leap Motion controls to SciView!

Language: Python - Size: 113 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0