An open API service providing repository metadata for many open source software ecosystems.

Topic: "image-analysis-workflows"

Cardiac-MR-Group-Lund/segment-open

Segment Source Distribution

Language: MATLAB - Size: 262 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 57 - Forks: 30

MontpellierRessourcesImagerie/imagej_macros_and_scripts

ImageJ macros and scripts written at the imaging facility MRI

Language: Jupyter Notebook - Size: 17.1 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 33 - Forks: 17

ciccalab/SIMPLI

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

Language: R - Size: 45.2 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 26 - Forks: 4

tlnagy/OMETIFF.jl

I/O operations for OME-TIFF files in Julia

Language: Julia - Size: 78.9 MB - Last synced at: 23 days ago - Pushed at: 6 months ago - Stars: 24 - Forks: 7

crud89/Texturize

A unified framework for example-based texture synthesis, developed alongside my master's thesis.

Language: C++ - Size: 19.4 MB - Last synced at: 29 days ago - Pushed at: about 6 years ago - Stars: 17 - Forks: 1

waliens/sldc

An open-source Python framework created for accelerating development of large image analysis workflows

Language: Python - Size: 397 KB - Last synced at: 6 days ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 1

hansenjn/MotiQ

A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

Language: Java - Size: 7.93 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 5 - Forks: 0

Quantitative-Big-Imaging/Quantitative-Big-Imaging-2017

The material for the Quantitative Big Imaging Course at ETHZ for Spring Semester 2017

Language: HTML - Size: 119 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 4 - Forks: 4

PathologyDataScience/MatDigitalPathology

Matlab functions to support analysis of digital pathology images.

Language: Matlab - Size: 24.4 KB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 3 - Forks: 3

ggirelli/pygpseq 📦

Python3 package to analyse GPSeq images and manage TIFF files.

Language: Python - Size: 4.27 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1

jonasoh/AuTToFlux

Pipeline for high-throughput analysis of RFP/GFP ratios in vacuoles

Language: R - Size: 804 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 2

ogemarques/python-matlab

Example of how to integrate MATLAB apps into a Python deep learning workflow for computer vision and image analysis tasks.

Size: 7.67 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

rjrahul24/cnn-logistic-image-analysis

We build upon Logistic Regression concepts and create a Deep Learning Convolution Neural Network. This repository explains how Logistic Regression is really the root of building Multilayer Perceptron models for Machine Learning and Deep Learning.

Language: Jupyter Notebook - Size: 431 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

kmader/conduit_analysis

Language: Jupyter Notebook - Size: 11.1 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 1

Related Topics
image-processing 9 image-analysis 8 matlab 3 image-analysis-and-processing 3 imagej-plugins 2 segmentation 2 bioimage-analysis 2 ome-tiff 2 deep-learning 2 computer-vision 2 imagej 2 morphology-reconstruction 1 morphology-metrics 1 morphology-analysis 1 morphology 1 motility 1 microglial-motility 1 microglial-morphology 1 microglia 1 toolsets 1 fluorescence-microscopy-imaging 1 fluorescence-microscopy-analysis 1 cell-migration 1 python 1 image-segmentation-pipeline 1 image-segmentation 1 image-annotation-tool 1 image-annotation 1 science 1 r 1 jython 1 imagej-macros 1 imagej-macro-scripts 1 imagej-macro 1 fiji-macro 1 fiji 1 ome-files 1 micromanager 1 julia-language 1 julia 1 textures 1 texture-synthesis 1 texture-mapping 1 texture-generation 1 texture-analysis 1 synthetic-images 1 procedural-textures 1 computer-graphics 1 pytorch-tutorial 1 pytorch 1 logistic-regression 1 binder-ready 1 timelapse-image 1 motility-analysis 1 biology 1 tiff-format 1 tiff-files 1 tiff 1 nuclei 1 image 1 gpseq 1 fish-signals 1 cell 1 3d 1 plugins 1 plugin-system 1 plugin 1 medical-imaging 1 medical-image-processing 1 medical 1 matlab-interface 1 matlab-gui 1 magnetic-resonance-imaging 1 computedtomography 1 computed-tomography 1 cardiac-segmentation 1 cardiac-dynamics 1 cardiac 1 autophagy 1 tissue-classification 1 tissue-analysis 1 single-cell-analysis 1 mcd 1 life-sciences-image 1 immunofluorescence 1 imc 1 imaging-mass-cytometry 1 histology 1 histological-images 1 gating 1 cell-segmentation 1 bioimaging 1 bioimage-tools 1 bioimage-informatics 1 microscopy 1 digital-pathology 1 cancer 1 lecture-slides 1 knime 1 educational 1