Topic: "deepvariant"
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Language: Python - Size: 786 MB - Last synced at: 18 days ago - Pushed at: about 1 month ago - Stars: 3,365 - Forks: 742
atgenomix/deepvariant-on-spark
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Language: Shell - Size: 115 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 12 - Forks: 5
abs-tudelft/variant-calling-at-scale
Scalable and High Performance Variant Calling on Cluster Environments
Language: Python - Size: 818 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 10 - Forks: 0
NCI-CGR/GEMSCAN
Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
Language: Python - Size: 17.4 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 5 - Forks: 7
nikostr/dna-seq-deepvariant-glnexus-variant-calling
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
Language: Python - Size: 86.1 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 4 - Forks: 1
esohkevin/ei-ngs
Workflows for whole-genome/exome sequencing data analysis
Language: Nextflow - Size: 628 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 3 - Forks: 1
OrangeGenomix/spark-deepvariant-examples
Notebooks and examples for DeepVariant on Spark project.
Size: 51.8 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
saresend/deepvariant-challenge
A small repo that eases use of google's deepvariant with GWA metastudies about hypertension
Language: Jupyter Notebook - Size: 3.64 MB - Last synced at: 23 days ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
