Topic: "genomic-selection"
YinLiLin/KAML
:bicyclist: Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction
Language: R - Size: 21 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 42 - Forks: 13
frahik/BMTME
Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]
Language: R - Size: 1.07 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 13 - Forks: 10
vangiangtran/BWGS
2024 BreedWheat Genomic Selection pipeline
Language: R - Size: 20 MB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 5
grimmlab/easyPheno
easyPheno: a model agnostic phenotype prediction framework
Language: Python - Size: 25.9 MB - Last synced at: 18 days ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 5
oumarkme/TSDFGS
Training set determination for genomic selection.
Language: R - Size: 37.8 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 3
INRA/rgs3
R package wrapping the GS3 program for genomic selection (http://genoweb.toulouse.inra.fr/~alegarra/).
Language: R - Size: 2.84 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 5 - Forks: 1
Foggalong/RobustOCS
Robust optimal contirbution selection problems for genetics with Python
Language: Python - Size: 9.98 MB - Last synced at: 7 days ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 0
jeffersonfparil/poolgen
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
Language: Rust - Size: 35.8 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 3 - Forks: 0
wolfemd/PredictOutbredCrossVar
Reproducible documentation: Wolfe et al. Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices
Language: R - Size: 43.3 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 1
WevertonGomesCosta/Genomic-Selection-for-Drought-Tolerance-Using-Genome-Wide-SNPs-in-Casava
This website is a project for analysis of the Genomic Selection for Drought Tolerance Using Genome Wide GBS and/or DART in Cassava by EMBRAPA Mandioca.
Language: R - Size: 241 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0
grimmlab/phenotype_prediction
A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species
Language: Jupyter Notebook - Size: 67.1 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 2
zjwinn/Phenomic-vs-GP-A-Comparison-of-Prediction-Accuracies-for-GY-in-HWW
This is a public repository for relevant code from the publication of the same name.
Size: 14.9 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
GuLinLin/ELPGV
Ensemble learning for integrative prediction of genetic values with genomic variants.
Language: R - Size: 1020 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
wolfemd/NRCRI_2021GS
This project documents informatics and genomic prediction to support the National Root Crop Research Institute 2021 cassava genomic selection breeding program.
Language: R - Size: 24.8 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
IBCHgenomic/webanno
a unified platform for variant search
Language: TypeScript - Size: 25.4 KB - Last synced at: about 8 hours ago - Pushed at: about 9 hours ago - Stars: 0 - Forks: 0
tony2015116/mintyr
Fresh and Efficient Data Processing Tools
Language: R - Size: 5.39 MB - Last synced at: 22 days ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
CareyMetheringham/MardenPark
Code associated with 'Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic'
Language: R - Size: 1.66 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
zjwinn/MVGS-improves-GP-Accuracy-in-SRWW
This is a public repository for relevant code from the publication found at https://doi.org/10.1002/csc2.20994.
Size: 4.32 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
WevertonGomesCosta/Genomic-Selection_Course
Minicourse "Application of genomic selection to data from multiple environments" with Professor PhD Kaio Dias in XIII SIGM by GENMELHOR.
Language: R - Size: 10.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
czheluo/PPISR
Polygenic Prediction of Complex Traits with Iterative Screen Regression Models
Language: MATLAB - Size: 12.4 MB - Last synced at: 2 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
DPCscience/miscellaneous
R-codes various
Language: R - Size: 25.4 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
frahik/GFR
Genomic Functional Regression in R [R Package - dev version]
Language: R - Size: 49.7 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1
stefanedwards/breeding-game
Shiny app for playing with breeding strategy choices using realistic genotypes
Language: R - Size: 1.77 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
